update requirements, udpate deprecated nibabel calls. use nilearn nif… #71
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name: Building and Testing Workflow | |
on: [workflow_dispatch,push] | |
concurrency: | |
group: ${{ github.head_ref || github.run_id }} | |
cancel-in-progress: true | |
jobs: | |
build_neurovault: | |
runs-on: ubuntu-latest | |
steps: | |
- | |
name: Checkout | |
uses: actions/checkout@v3 | |
- | |
name: Configuration | |
run: | | |
cp .env.example .env | |
- | |
name: Set up Docker Buildx | |
uses: docker/setup-buildx-action@v2 | |
- | |
name: Login to GitHub Container Registry | |
uses: docker/login-action@v2 | |
with: | |
registry: ghcr.io | |
username: ${{ github.repository_owner }} | |
password: ${{ secrets.GITHUB_TOKEN }} | |
- | |
name: set lower case owner name | |
run: | | |
echo "OWNER_LC=${OWNER,,}" >>${GITHUB_ENV} | |
env: | |
OWNER: '${{ github.repository_owner }}' | |
- | |
name: Build and push | |
uses: docker/bake-action@v2 | |
with: | |
files: docker-compose.yml | |
push: true | |
load: false | |
pull: false | |
set: | | |
worker.tags=ghcr.io/${{ env.OWNER_LC }}/neurovault:${{ hashFiles('**/neurovault/**') }} | |
worker.cache-from=type=registry,ref=ghcr.io/${{ env.OWNER_LC }}/neurovault:${{ hashFiles('**/neurovault/**') }} | |
worker.cache-from=type=gha,scope=cached-neurovault | |
worker.cache-to=type=gha,scope=cached-neurovault,mode=max | |
django.tags=ghcr.io/${{ env.OWNER_LC }}/neurovault_fs:${{ hashFiles('**/neurovault/**') }} | |
django.cache-from=type=registry,ref=ghcr.io/${{ env.OWNER_LC }}/neurovault_fs:${{ hashFiles('**/neurovault/**') }} | |
django.cache-from=type=gha,scope=cached-neurovault_fs | |
django.cache-to=type=gha,scope=cached-neurovault_fs,mode=max | |
neurovault_backend_tests: | |
runs-on: ubuntu-latest | |
needs: build_neurovault | |
steps: | |
- | |
name: Checkout | |
uses: actions/checkout@v3 | |
- | |
name: Set up Docker Buildx | |
uses: docker/setup-buildx-action@v2 | |
- | |
name: Configuration | |
run: | | |
cp .env.example .env | |
- | |
name: load images | |
uses: docker/bake-action@v2 | |
with: | |
files: docker-compose.yml | |
push: false | |
load: true | |
set: | | |
worker.cache-from=type=gha,scope=cached-neurovault | |
django.cache-from=type=gha,scope=cached-neurovault_fs | |
- | |
name: spin up backend | |
run: | | |
# pull specific images since an old version of neurovault is on dockerhub | |
docker compose pull postgres redis | |
docker compose \ | |
-f docker-compose.yml \ | |
up -d --no-build | |
- | |
name: Migrate Database | |
run: | | |
sleep 10 && until docker compose exec -T \ | |
postgres pg_isready -U postgres; do sleep 1; done | |
docker compose exec -T django python manage.py migrate | |
- | |
name: Backend Tests | |
run: | | |
docker compose exec -T django python manage.py test |