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Added revamped website
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@oruebel
oruebel committed Apr 15, 2018
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4 changes: 4 additions & 0 deletions Gemfile
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source 'https://rubygems.org'

gem 'jekyll'
gem 'jekyll-scholar'
4 changes: 3 additions & 1 deletion README.md
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# neurodatawithoutborders.github.io
# NeurodataWithoutBorders: Neurophysiology

This repo is for the technical website for the NWB:N project
23 changes: 21 additions & 2 deletions _config.yml
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plugins:
- jemoji
# Welcome to Jekyll!
#
# This config file is meant for settings that affect your whole blog, values
# which you are expected to set up once and rarely need to edit after that.
# For technical reasons, this file is *NOT* reloaded automatically when you use
# 'jekyll serve'. If you change this file, please restart the server process.

# Site settings
title: NeurodataWithoutBorders Neurophysiology
email: oruebel@lbl.gov
description: > # this means to ignore newlines until "baseurl:"
Web page for technical content for NWB Neurophysiology
exclude: ["README.md", "Gemfile" ]
url: ""

include:
- _pages

sass:
sass_dir: _sass

13 changes: 13 additions & 0 deletions _includes/footer.html
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<div id="footer" class="panel">
<div class="panel-footer">
<div class="container-fluid">
<div class="row">
All rights reserved.
</div>
</div>
</div>
</div>
</div>

<script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script>
<script src="{{ site.url }}{{ site.baseurl }}/js/bootstrap.min.js"></script>
16 changes: 16 additions & 0 deletions _includes/head.html
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<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
<title>{% if page.title %}{{ page.title | escape }}{% else %}{{ site.title | escape }}{% endif %}</title>
<meta name="description" content="{% if page.excerpt %}{{ page.excerpt | strip_html | strip_newlines | truncate: 160 }}{% else %}{{ site.description }}{% endif %}">
<link rel="stylesheet" href="{{ "/css/main.css" | prepend: site.baseurl | prepend: site.url}}">
<link rel="canonical" href="{{ page.url | replace:'index.html','' | prepend: site.baseurl | prepend: site.url }}">
<!--<link rel="shortcut icon" type ="image/x-icon" href="{{ site.url }}{{ site.baseurl }}/images/favicon.ico">-->
<script>
function resizeIframe(obj) {
obj.style.height = obj.contentWindow.document.body.scrollHeight + 'px';
}
</script>

</head>
69 changes: 69 additions & 0 deletions _includes/header.html
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<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container-fluid">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar-collapse-1" aria-expanded="false">
<span class="sr-only">Toggle navigation</span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="{{ site.url }}{{ site.baseurl }}/"><img alt="NWB:N" src="images/nwb_n_logo.png" height="30px"></a>
</div>
<div class="collapse navbar-collapse" id="navbar-collapse-1">
<ul class="nav navbar-nav navbar-right">
<li><a href="{{ site.url }}{{ site.baseurl }}/">Home</a></li>
<li class="dropdown">
<a class="dropdown-toggle" data-toggle="dropdown" href="#">About<span class="caret"></span></a>
<ul class="dropdown-menu">
<li><a href="{{ site.url }}{{ site.baseurl }}/mission">Mission</a></li>
<li><a href="{{ site.url }}{{ site.baseurl }}/overview">Project Overview</a></li>
<li><a href="{{ site.url }}{{ site.baseurl }}/vision">Project Vision</a></li>
<li><a href="{{ site.url }}{{ site.baseurl }}/credits_and_legal">Credits and Legal</a></li>
<li class="divider"></li>
<li><a href="{{ site.url }}{{ site.baseurl }}/publications">Publications</a></li>
</ul>
</li>
<li class="dropdown">
<a class="dropdown-toggle" data-toggle="dropdown" href="#">User Resources<span class="caret"></span></a>
<ul class="dropdown-menu">
<li><a href="{{ site.url }}{{ site.baseurl }}/gettingstarted">Getting Started</a></li>
<li><a href="{{ site.url }}{{ site.baseurl }}/faq">Frequently Asked Questions</a></li>
<li><a href="{{ site.url }}{{ site.baseurl }}/pynwb">PyNWB : Python Reference API</a></li>
</ul>
</li>
<li class="dropdown">
<a class="dropdown-toggle" data-toggle="dropdown" href="#">Developer Resources<span class="caret"></span></a>
<ul class="dropdown-menu">
<li class="divider"></li>
<li class="dropdown-header">Documentation</li>
<li><a href="{{ site.url }}{{ site.baseurl }}/pynwb">PyNWB : Python Reference API</a></li>
<li><a href="{{ site.url }}{{ site.baseurl }}/schemalanguage"> Specification Language</a></li>
<li><a href="{{ site.url }}{{ site.baseurl }}/datastandard">Data Standard Schema</a></li>
<li><a href="{{ site.url }}{{ site.baseurl }}/storage_hdf">Data Storage Specification: HDF5</a></li>
<li class="divider"></li>
<li class="dropdown-header">Guidelines</li>
<li><a href="{{ site.url }}{{ site.baseurl }}/contributing">Contributing Guidelines</a></li>
<li><a href="{{ site.url }}{{ site.baseurl }}/code_of_conduct">Code of Conduct</a></li>
<li><a href="{{ site.url }}{{ site.baseurl }}/development_plan">Development Plan</a></li>
<li class="divider"></li>
<li class="dropdown-header">GitHub (External Links)</li>
<li><a href="https://github.com/NeurodataWithoutBorders" target="_blank"> All / GitHub Organization</a></li>
<li><a href="https://github.com/NeurodataWithoutBorders/pynwb" target="_blank">PyNWB </a></li>
<li><a href="https://github.com/NeurodataWithoutBorders/matnwb" target="_blank">MatNWB</a></li>
<li><a href="https://github.com/NeurodataWithoutBorders/nwb-schema" target="_blank">NWB:N Schema</a></li>
<li><a href="https://github.com/NeurodataWithoutBorders/nwb-docutils" target="_blank">NWB:N Documentation Utilities</a></li>
</ul>
</li>
<li class="dropdown">
<a class="dropdown-toggle" data-toggle="dropdown" href="#">Events<span class="caret"></span></a>
<ul class="dropdown-menu">
<li><a href="{{ site.url }}{{ site.baseurl }}/events">Overview</a></li>
<li><a href="{{ site.url }}{{ site.baseurl }}/hackathon_events">Hackathons</a></li>
</ul>
</li>
</ul>
</div>
</div>
</div>


20 changes: 20 additions & 0 deletions _layouts/default.html
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<!DOCTYPE html>
<html>

{% include head.html %}

<body>

{% include header.html %}

<div class="container-fluid">
<div class="row">
{{ content }}
</div>
</div>

{% include footer.html %}

</body>

</html>
6 changes: 6 additions & 0 deletions _layouts/gridlay.html
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---
layout: default
---
<div id="gridid" class="col-sm-12">
{{ content }}
</div>
14 changes: 14 additions & 0 deletions _layouts/no_navbar.html
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<!DOCTYPE html>
<html>
{% include head.html %}
<body>
<div class="container-fluid">
<div class="row">
<div id="textid" class="col-sm-12">
{{ content }}
</div>
</div>
</div>
{% include footer.html %}
</body>
</html>
14 changes: 14 additions & 0 deletions _layouts/page.html
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---
layout: default
---
<article class="post">

<header class="post-header">
<h1 class="post-title">{{ page.title }}</h1>
</header>

<div class="post-content">
{{ content }}
</div>

</article>
6 changes: 6 additions & 0 deletions _layouts/research.html
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---
layout: default
---
<div id="research" class="col-sm-12">
{{ content }}
</div>
10 changes: 10 additions & 0 deletions _pages/404.md
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---
title: "Page Not Found"
layout: default
excerpt: "Page not found. Your pixels are in another canvas."
sitemap: false
permalink: /404.html
---

Sorry, but the page you were trying to view does not exist.

55 changes: 55 additions & 0 deletions _pages/code_of_conduct.md
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---
title: "PyNWB"
layout: default
excerpt: "PyNWB"
sitemap: false
permalink: /code_of_conduct
---

# Contributor Covenant Code of Conduct

## Our Pledge

In the interest of fostering an open and welcoming environment, we as contributors and maintainers pledge to making participation in our project and our community a harassment-free experience for everyone, regardless of age, body size, disability, ethnicity, gender identity and expression, level of experience, nationality, personal appearance, race, religion, or sexual identity and orientation.

## Our Standards

Examples of behavior that contributes to creating a positive environment include:

* Using welcoming and inclusive language
* Being respectful of differing viewpoints and experiences
* Gracefully accepting constructive criticism
* Focusing on what is best for the community
* Showing empathy towards other community members

Examples of unacceptable behavior by participants include:

* The use of sexualized language or imagery and unwelcome sexual attention or advances
* Trolling, insulting/derogatory comments, and personal or political attacks
* Public or private harassment
* Publishing others’ private information, such as a physical or electronic address, without explicit permission
* Other conduct which could reasonably be considered inappropriate in a professional setting

## Our Responsibilities

Project maintainers are responsible for clarifying the standards of acceptable behavior and are expected to take appropriate and fair corrective action in response to any instances of unacceptable behavior.

Project maintainers have the right and responsibility to remove, edit, or reject comments, commits, code, wiki edits, issues, and other contributions that are not aligned to this Code of Conduct, or to ban temporarily or permanently any contributor for other behaviors that they deem inappropriate, threatening, offensive, or harmful.

## Scope

This Code of Conduct applies both within project spaces and in public spaces when an individual is representing the project or its community. Examples of representing a project or community include using an official project e-mail address, posting via an official social media account, or acting as an appointed representative at an online or offline event. Representation of a project may be further defined and clarified by project maintainers.

## Enforcement

Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by contacting the project team. All complaints will be reviewed and investigated and will result in a response that is deemed necessary and appropriate to the circumstances. The project team is obligated to maintain confidentiality with regard to the reporter of an incident. Further details of specific enforcement policies may be posted separately.

Project maintainers who do not follow or enforce the Code of Conduct in good faith may face temporary or permanent repercussions as determined by other members of the project’s leadership.

## Attribution

This Code of Conduct is adapted from the [Contributor Covenant](http://contributor-covenant.org), version 1.4, available at [http://contributor-covenant.org/version/1/4](http://contributor-covenant.org/version/1/4/).




11 changes: 11 additions & 0 deletions _pages/contributing.md
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---
title: "PyNWB"
layout: default
excerpt: "PyNWB"
sitemap: false
permalink: /contributing
---

<iframe style="width: 100%;height: 100vh;position: relative;" src="https://pynwb.readthedocs.io/en/latest/contributing.html" frameborder="0" allowfullscreen></iframe>


51 changes: 51 additions & 0 deletions _pages/credits.md
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---
title: "NWB:N Credits and Legal"
layout: default
excerpt: "Credits and Legal"
sitemap: false
permalink: /credits_and_legal
---

# Credits

**This section is under construction**

## NWB:N: Version 2

Development of NWB:N 2 is being led by Oliver Ruebel and Andrew Tritt et al. in collaboration with and with significant
contributions by the NWB:N community and under the guidance of the NWB Executive Board. For specific contribution see the
Git logs and contributor statistics on GitHub:

* <a href="https://github.com/NeurodataWithoutBorders/pynwb/graphs/contributors" target="_blank">PyNWB Contributors</a>
* <a href="https://github.com/NeurodataWithoutBorders/nwb-schema/graphs/contributors" target="_blank">NWB Schema and Docs Contributors</a>
* <a href="https://github.com/NeurodataWithoutBorders/matnwb/graphs/contributors" target="_blank">MatNWB Contributors</a>

## PyNWB

Development of PyNWB is lead by Andrew Tritt and Oliver Ruebel (Lawerence Berkeley National Laboratory).
For a detailed list of contributors to PyNWB visit <a href="https://github.com/NeurodataWithoutBorders/pynwb/graphs/contributors" target="_blank">PyNWB on GitHub</a>

# NWB:N: Version 1.0.x and earlier

Version 1.0.5g (and earlier) of the NWB file format were created by Jeff Teeters et al. as part of the first NWB pilot project. NWB:N 2 has been adopted from the final version of the format released by the original NWB pilot project.

# The Team

**This section is under construction**

* <a href="https://github.com/NeurodataWithoutBorders/pynwb/graphs/contributors" target="_blank">PyNWB Contributors</a>
* <a href="https://github.com/NeurodataWithoutBorders/nwb-schema/graphs/contributors" target="_blank">NWB Schema and Docs Contributors</a>
* <a href="https://github.com/NeurodataWithoutBorders/matnwb/graphs/contributors" target="_blank">MatNWB Contributors</a>

# Partners, Members, and Supporters

For details on the partners, members, and supporters of NWB:N please the
[nwb.org](https://www.nwb.org/) project website.
# Legal

**NOTE** copyright and licence may vary between APIs and packages. See the documentation and source repositories for
specific licencing and copyright. Here we show the licencing and copyright information from the NWB:N schema.

<iframe style="width: 100%;height: 800px;position: relative;" src="https://nwb-schema.readthedocs.io/en/latest/credits.html#legal" frameborder="0" allowfullscreen></iframe>


9 changes: 9 additions & 0 deletions _pages/data_standard_schema_docs.md
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---
title: "Schema Language"
layout: default
excerpt: "PyNWB"
sitemap: false
permalink: /datastandard
---

<iframe style="width: 100%;height: 100vh;position: relative;" src="https://nwb-schema.readthedocs.io/en/latest/" frameborder="0" allowfullscreen></iframe>

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