Package request: amrfinder

[Pandapip1]

Project description

A tool that identifies AMR genes, resistance-associated point mutations, and select other classes of genes using protein annotations and/or assembled nucleotide sequences.

Metadata

• homepage URL: https://www.ncbi.nlm.nih.gov/pathogens/antimicrobial-resistance/AMRFinder/
• source URL: https://github.com/ncbi/amr
• license: New license request: NCBI-PD [SPDX-Online-Tools] spdx/license-list-XML#2419
• platforms: unix, linux, darwin

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[wizardwatch]

I have a very basic version of this done, just a flake/package that does the bare minimum to let it pass the tests. It will likely be a couple of months before I can contribute it here or upstream, but I can say that this work is pretty easy if someone else would like to do it before then.

[Pandapip1]

I have a very basic version of this done, just a flake/package that does the bare minimum to let it pass the tests. It will likely be a couple of months before I can contribute it here or upstream, but I can say that this work is pretty easy if someone else would like to do it before then.

Can you put the flake / package file in a gist?

[wizardwatch]

I can check if I can do so immediately, but it is related to an active research project at UGA, so I will have to get approval. If I can, I will post it. Fortunately, the paper will be published soon, and I retain full ownership of the code, so I will make a gist at that point.