elasticsearch6 fails to build with can't find libz.so.1

[fooblahblah]

Issue description

During nixos-rebuild --upgrade switch the elasticsearch6 package fails to build due to a missing dependency on libz.so.1.

Steps to reproduce

In /etc/nixos/configuration.nix I'm using the following to enable ES:

services = {
   # other services...
    kibana = {
      enable = true;
      package = pkgs.kibana6;
    };

   elasticsearch = {
      enable = true;
      package = pkgs.elasticsearch6;
      extraConf = ''                                                                                                                                  
        http.max_content_length: 200mb                                                                                                                
        path.repo: ["/home/elasticsearch/backups"]                                                                                                    
      '';
      extraJavaOptions = [];
    };
};

Which results in:

searching for dependencies of /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/bin/autodetect
  liblog4cxx.so.10 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/liblog4cxx.so.10
  libboost_program_options-gcc62-mt-1_65_1.so.1.65.1 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libboost_program_options-gcc62-mt-1_65_1.so.1.65.1
  libboost_filesystem-gcc62-mt-1_65_1.so.1.65.1 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libboost_filesystem-gcc62-mt-1_65_1.so.1.65.1
  libboost_system-gcc62-mt-1_65_1.so.1.65.1 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libboost_system-gcc62-mt-1_65_1.so.1.65.1
  libMlCore.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlCore.so
  libMlMaths.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlMaths.so
  libMlModel.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlModel.so
  libMlApi.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlApi.so
  libstdc++.so.6 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libstdc++.so.6
setting RPATH to: /nix/store/3s920c43pgzi6vdabjs90in308jnbckv-zlib-1.2.11/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib
searching for dependencies of /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/bin/normalize
  liblog4cxx.so.10 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/liblog4cxx.so.10
  libboost_program_options-gcc62-mt-1_65_1.so.1.65.1 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libboost_program_options-gcc62-mt-1_65_1.so.1.65.1
  libMlCore.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlCore.so
  libMlMaths.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlMaths.so
  libMlModel.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlModel.so
  libMlApi.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlApi.so
  libstdc++.so.6 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libstdc++.so.6
setting RPATH to: /nix/store/3s920c43pgzi6vdabjs90in308jnbckv-zlib-1.2.11/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib
searching for dependencies of /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/bin/controller
  liblog4cxx.so.10 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/liblog4cxx.so.10
  libboost_program_options-gcc62-mt-1_65_1.so.1.65.1 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libboost_program_options-gcc62-mt-1_65_1.so.1.65.1
  libMlCore.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlCore.so
  libstdc++.so.6 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libstdc++.so.6
setting RPATH to: /nix/store/3s920c43pgzi6vdabjs90in308jnbckv-zlib-1.2.11/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib
searching for dependencies of /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/bin/categorize
  liblog4cxx.so.10 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/liblog4cxx.so.10
  libboost_program_options-gcc62-mt-1_65_1.so.1.65.1 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libboost_program_options-gcc62-mt-1_65_1.so.1.65.1
  libMlCore.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlCore.so
  libMlMaths.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlMaths.so
  libMlModel.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlModel.so
  libMlApi.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlApi.so
  libstdc++.so.6 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libstdc++.so.6
setting RPATH to: /nix/store/3s920c43pgzi6vdabjs90in308jnbckv-zlib-1.2.11/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib
searching for dependencies of /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/bin/autoconfig
  liblog4cxx.so.10 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/liblog4cxx.so.10
  libboost_program_options-gcc62-mt-1_65_1.so.1.65.1 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libboost_program_options-gcc62-mt-1_65_1.so.1.65.1
  libMlCore.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlCore.so
  libMlMaths.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlMaths.so
  libMlModel.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlModel.so
  libMlApi.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlApi.so
  libMlConfig.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlConfig.so
  libstdc++.so.6 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libstdc++.so.6
setting RPATH to: /nix/store/3s920c43pgzi6vdabjs90in308jnbckv-zlib-1.2.11/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib
searching for dependencies of /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlConfig.so
  liblog4cxx.so.10 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/liblog4cxx.so.10
  libMlCore.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlCore.so
  libMlMaths.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlMaths.so
  libMlApi.so -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libMlApi.so
  libstdc++.so.6 -> found: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libstdc++.so.6
setting RPATH to: /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib:/nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib
searching for dependencies of /nix/store/x0d8mp4spvhschrcbshg654mm7ga557p-elasticsearch-6.5.1/modules/x-pack-ml/platform/linux-x86_64/lib/libxml2.so.2
  libz.so.1 -> not found!
builder for '/nix/store/rwib5ql9m9cqwj4vsh48afi98qc92gv5-elasticsearch-6.5.1.drv' failed with exit code 1

Technical details

Please run nix-shell -p nix-info --run "nix-info -m" and paste the
results.

 nix-shell -p nix-info --run "nix-info -m"
these paths will be fetched (0.00 MiB download, 0.00 MiB unpacked):
  /nix/store/c9245msqhcnqk7pg0kx1ayqwmq2scxm4-nix-info
copying path '/nix/store/c9245msqhcnqk7pg0kx1ayqwmq2scxm4-nix-info' from 'https://cache.nixos.org'...
 - system: `"x86_64-linux"`
 - host os: `Linux 4.19.20, NixOS, 18.09.2132.109a28ab954 (Jellyfish)`
 - multi-user?: `yes`
 - sandbox: `yes`
 - version: `nix-env (Nix) 2.1.3`
 - channels(root): `"nixos-18.09.2203.9bd45dddf81, unstable-19.03pre169108.36f31600749"`
 - channels(jsimpson): `"nixos-19.03pre161883.e85c1f58680"`
 - nixpkgs: `/nix/var/nix/profiles/per-user/jsimpson/channels/nixos/nixpkgs`

[stale]

Thank you for your contributions.

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[totoroot]

@fooblahblah Did the linked PR #56127 fix your issues?
I'm getting the same error for the pandas Python package and was wondering if zlib was just missing as a build input too...

[fooblahblah]

@totoroot Probably? It's been so long I can't recall. I ended up running ES6 before moving to 7 so I assume so. Good luck!