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Sheng, Caibin
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Jun 21, 2022
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Installation | ||
================ | ||
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To use ``scAR``, first install it using conda install or Git+pip. | ||
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Conda install | ||
------------------------------- | ||
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1, Install `conda <https://docs.conda.io/projects/conda/en/latest/user-guide/install/index.html>`_ | ||
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2, Create conda environment:: | ||
conda create -n scar | ||
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3, Activate conda environment:: | ||
conda activate scar | ||
4, Install scar:: | ||
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conda install -c bioconda scar | ||
5, Activate the scar conda environment:: | ||
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conda activate scar | ||
Git + pip | ||
------------------------------------------- | ||
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1, Clone scar repository:: | ||
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git clone https://github.com/Novartis/scAR.git | ||
2, Enter the cloned directory:: | ||
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cd scAR | ||
3, Create a conda environment | ||
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.. tabs:: | ||
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.. tab:: GPU version | ||
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.. code-block:: | ||
:caption: Please use ``scar-gpu`` if you have an nvidia graphics card and the corresponging driver installed | ||
conda env create -f scar-gpu.yml | ||
.. tab:: CPU version | ||
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.. code-block:: | ||
:caption: Please use ``scar-cpu`` if you don't have a graphics card availalble | ||
conda env create -f scar-cpu.yml | ||
4, Activate the scar conda environment:: | ||
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conda activate scar | ||
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body { | ||
margin: 0; | ||
font-family: -apple-system, BlinkMacSystemFont, "Segoe UI", Roboto, "Helvetica Neue", Arial, "Noto Sans", "Liberation Sans", sans-serif, "Apple Color Emoji", "Segoe UI Emoji", "Segoe UI Symbol", "Noto Color Emoji"; | ||
} |
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{# Import the theme's layout. #} | ||
{% extends "!layout.html" %} | ||
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{# Custom CSS overrides #} | ||
{% set bootswatch_css_custom = ['_static/scar-styles.css'] %} |
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