Removing DuckDB from unit tests

OHDSI · Jun 18, 2024 · 2970211 · 2970211
1 parent 145ebc6
commit 2970211
Showing 1 changed file with 46 additions and 46 deletions.
diff --git a/tests/testthat/setup.R b/tests/testthat/setup.R
@@ -220,49 +220,49 @@ testServers[[length(testServers) + 1]] <- list(
 )
 
 # DuckDB
-duckdbFile <- tempfile(fileext = ".duckdb")
-if (testthat::is_testing()) {
-  withr::defer(unlink(duckdbFile, force = TRUE), testthat::teardown_env())
-}
-cdmDatabaseSchema <- "main"
-connectionDetails <- createConnectionDetails(
-  dbms = "duckdb",
-  server = duckdbFile
-)
-connection <- connect(connectionDetails)
-insertTable(
-  connection = connection,
-  databaseSchema = cdmDatabaseSchema,
-  tableName = "person",
-  data = data.frame(person_id = seq_len(100),
-                    year_of_birth = round(runif(100, 1900, 2000)),
-                    race_concept_id = as.numeric(NA),
-                    gender_concept_id = rep(c(8507, 8532), 50),
-                    care_site_id = round(runif(100, 1, 1e7)))
-)
-insertTable(
-  connection = connection,
-  databaseSchema = cdmDatabaseSchema,
-  tableName = "observation_period",
-  data = data.frame(person_id = seq_len(100),
-                    observation_period_start_date = rep(as.Date("2000-01-01"), 100),
-                    observation_period_end_date = rep(as.Date(c("2000-06-01", "2001-12-31")), 50),
-                    period_type_concept_id = rep(0, 100))
-)
-insertTable(
-  connection = connection,
-  databaseSchema = cdmDatabaseSchema,
-  tableName = "vocabulary",
-  data = data.frame(vocabulary_id = c("a", "b"),
-                    vocabulary_name = c("a", "b"),
-                    vocabulary_reference= c("a", "b"),
-                    vocabulary_version = c("a", "b"),
-                    vocabulary_concpet_id = c(1, 2))
-)
-disconnect(connection)
-testServers[[length(testServers) + 1]] <- list(
-  connectionDetails = connectionDetails,
-  NULL,
-  cdmDatabaseSchema = cdmDatabaseSchema,
-  tempEmulationSchema = NULL
-)
+# duckdbFile <- tempfile(fileext = ".duckdb")
+# if (testthat::is_testing()) {
+#   withr::defer(unlink(duckdbFile, force = TRUE), testthat::teardown_env())
+# }
+# cdmDatabaseSchema <- "main"
+# connectionDetails <- createConnectionDetails(
+#   dbms = "duckdb",
+#   server = duckdbFile
+# )
+# connection <- connect(connectionDetails)
+# insertTable(
+#   connection = connection,
+#   databaseSchema = cdmDatabaseSchema,
+#   tableName = "person",
+#   data = data.frame(person_id = seq_len(100),
+#                     year_of_birth = round(runif(100, 1900, 2000)),
+#                     race_concept_id = as.numeric(NA),
+#                     gender_concept_id = rep(c(8507, 8532), 50),
+#                     care_site_id = round(runif(100, 1, 1e7)))
+# )
+# insertTable(
+#   connection = connection,
+#   databaseSchema = cdmDatabaseSchema,
+#   tableName = "observation_period",
+#   data = data.frame(person_id = seq_len(100),
+#                     observation_period_start_date = rep(as.Date("2000-01-01"), 100),
+#                     observation_period_end_date = rep(as.Date(c("2000-06-01", "2001-12-31")), 50),
+#                     period_type_concept_id = rep(0, 100))
+# )
+# insertTable(
+#   connection = connection,
+#   databaseSchema = cdmDatabaseSchema,
+#   tableName = "vocabulary",
+#   data = data.frame(vocabulary_id = c("a", "b"),
+#                     vocabulary_name = c("a", "b"),
+#                     vocabulary_reference= c("a", "b"),
+#                     vocabulary_version = c("a", "b"),
+#                     vocabulary_concpet_id = c(1, 2))
+# )
+# disconnect(connection)
+# testServers[[length(testServers) + 1]] <- list(
+#   connectionDetails = connectionDetails,
+#   NULL,
+#   cdmDatabaseSchema = cdmDatabaseSchema,
+#   tempEmulationSchema = NULL
+# )