@OHDSI

Observational Health Data Sciences and Informatics

  • ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 58 41 Apache-2.0 Updated Sep 25, 2018
  • [Under development] OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

    Java 43 52 2 issues need help Updated Sep 24, 2018
  • R Updated Sep 24, 2018
  • [Under development] An R package and Java library for hydrating package skeletons into executable R study packages based on specifications in JSON format.

    Java Updated Sep 24, 2018
  • An R package for performing patient level prediction.

    R 42 31 Updated Sep 24, 2018
  • Definition and DDLs for the OMOP Common Data Model (CDM)

    Batchfile 210 137 Apache-2.0 Updated Sep 24, 2018
  • Dockerfile 3 3 Apache-2.0 Updated Sep 24, 2018
  • This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.

    R 9 15 Updated Sep 24, 2018
  • [Under development] An R package implementing Large-Scale Evidence Generation and Evaluation in a Network of Databases (LEGEND).

    R Updated Sep 23, 2018
  • Interfaces for standardized OHDSI analyses (Cohort Characterization, TxPathway, Incidence Rate etc.) used as an exchange standard or implementation guide

    Java 2 Apache-2.0 Updated Sep 23, 2018
  • Commons module contains common code re-used between all Arachne components

    Java 3 Updated Sep 23, 2018
  • Shiny apps in this repository will be automatically deployed to the OHDSI Shiny server.

    R 1 1 Updated Sep 23, 2018
  • CIRCE is a cohort definition and syntax compiler tool for OMOP CDMv5

    Java 2 5 Apache-2.0 Updated Sep 21, 2018
  • An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 29 21 Updated Sep 20, 2018
  • [Under development] Visualizations is a collection of JavaScript modules to support D3 visualizations in web-based applications

    JavaScript 6 3 Updated Sep 20, 2018
  • Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database

    HTML 56 59 Updated Sep 20, 2018
  • Arachne Data Node is a component that facilitates connection and communication between local databases and Arachne Central

    Java 1 Updated Sep 20, 2018
  • PALLAS: Build process for OMOP Standardized Vocabularies. Currently not available as independent release. Therefore, do not clone or try to replicate. It is work in progress and not ready for replication.

    PLpgSQL 44 25 Unlicense Updated Sep 20, 2018
  • An R package for the evaluation of estimation methods

    R 3 1 Updated Sep 20, 2018
  • Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 18 16 Updated Sep 19, 2018
  • Arachne Central middle-tier including Service API.

    Java 5 2 Updated Sep 19, 2018
  • A repository for development and sharing of OHDSI specifications in the OpenAPI 3.0 format.

    1 Apache-2.0 Updated Sep 19, 2018
  • An R package for connecting to databases using JDBC.

    R 13 26 Updated Sep 19, 2018
  • An R package containing the external JAR dependencies of the DatabaseConnector package.

    R 4 Updated Sep 19, 2018
  • drat repository for OHDSI R packages

    3 2 Updated Sep 18, 2018
  • Common Evidence Model (CEM) is a structure for standardizing evidence about drug-outcome relationship across disparate evidence sources.

    R 3 3 Apache-2.0 Updated Sep 18, 2018
  • Broadsea deploys the full OHDSI technology stack (R methods library & web tools), using cross-platform Docker container technology.

    JavaScript 11 12 Apache-2.0 Updated Sep 18, 2018
  • A Docker container that includes the OHDSI WebAPI (running in Apache Tomcat) and the OHDSI web applications.

    Dockerfile 3 4 Apache-2.0 Updated Sep 18, 2018
  • An R package for easy parallel computing, logging, and function call automation.

    R Updated Sep 18, 2018
  • A Docker container based on rocker/shiny with added java jdk and additional R packages.

    Dockerfile 1 MIT Updated Sep 18, 2018