Observational Health Data Sciences and Informatics

  • ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 73 45 Apache-2.0 Updated Feb 16, 2019
  • ETL for converting Korean National Emergency Department Infromation System (NEDIS)

    R 1 1 Apache-2.0 Updated Feb 16, 2019
  • CIRCE is a cohort definition and syntax compiler tool for OMOP CDMv5

    Java 2 5 Apache-2.0 Updated Feb 15, 2019
  • OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

    Java 49 57 2 issues need help Updated Feb 15, 2019
  • PALLAS: Build process for OMOP Standardized Vocabularies. Currently not available as independent release. Therefore, do not clone or try to replicate. It is work in progress and not ready for replication.

    PLpgSQL 52 29 Unlicense Updated Feb 15, 2019
  • Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database

    R 64 66 Updated Feb 15, 2019
  • An R package containing the external JAR dependencies of the DatabaseConnector package.

    R 5 Updated Feb 15, 2019
  • An R package for connecting to databases using JDBC.

    R 18 32 Updated Feb 15, 2019
  • [Under development] The Book of OHDSI repository

    TeX 6 3 CC0-1.0 Updated Feb 15, 2019
  • drat repository for OHDSI R packages

    3 3 Updated Feb 15, 2019
  • This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.

    R 19 30 Updated Feb 15, 2019
  • Interfaces for standardized OHDSI analyses (Cohort Characterization, TxPathway, Incidence Rate etc.) used as an exchange standard or implementation guide

    Java 2 Apache-2.0 Updated Feb 15, 2019
  • Conversion from Synthea CSV to OMOP CDM

    R 5 3 Apache-2.0 Updated Feb 14, 2019
  • [Under development] Course materials for OHDSI ETL tutorial

    1 Apache-2.0 Updated Feb 14, 2019
  • [Under development] This is an R package that implements a library of standard queries that run against the OMOP-CDM.

    R 1 4 Updated Feb 14, 2019
  • An R package for combining evidence from multiple sources (e.g. multiple data sites)

    R 1 Updated Feb 14, 2019
  • An R package of support tools that didn’t fit other categories, including tools for maintaining R libraries.

    R 3 8 Updated Feb 14, 2019
  • Virtual Machine containing SynPUF data in OMOP CDM, a RDBS including query client, WebAPI, ATLAS, R and Python.

    2 2 Apache-2.0 Updated Feb 13, 2019
  • [Under development] An R package implementing Large-Scale Evidence Generation and Evaluation in a Network of Databases (LEGEND).

    R Updated Feb 12, 2019
  • [Under development] A standard CDM dataset for testing and demonstration purposes.

    R 1 Updated Feb 11, 2019
  • [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed against OMOP CDM

    Java 7 5 Apache-2.0 Updated Feb 10, 2019
  • [Under development] An R package for comparing two versions of the Vocabulary.

    R 1 Updated Feb 8, 2019
  • Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI

    PLpgSQL 2 2 Updated Feb 8, 2019
  • Arachne Data Node is a component that facilitates connection and communication between local databases and Arachne Central

    Java 1 Updated Feb 7, 2019
  • HTML Apache-2.0 Updated Feb 6, 2019
  • Definition and DDLs for the OMOP Common Data Model (CDM)

    PLpgSQL 256 160 Apache-2.0 Updated Feb 7, 2019
  • An R package for the evaluation of estimation methods

    R 3 2 Updated Feb 5, 2019
  • Automation code and documentation for standing up the OHDSI toolstack in an AWS environment

    Apache-2.0 Updated Feb 1, 2019
  • We have some shared front-end solutions (services, utility methods, etc) between Atlas, Arachne, Athena, so want to put them into shared lib.

    JavaScript Apache-2.0 Updated Jan 31, 2019
  • An R package for generating features (covariates) for a cohort using data in the Common Data Model.

    R 18 29 Updated Jan 31, 2019

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