@OHDSI

Observational Health Data Sciences and Informatics

  • Network infrastructure for collaborative studies across disparate data nodes and researches

    CSS 7 3 Updated Dec 11, 2017
  • This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.

    R 5 6 Updated Dec 10, 2017
  • Arachne Central middle-tier including Service API.

    Java 3 2 Updated Dec 10, 2017
  • Arachne Data Node is a component that facilitates connection and communication between local databases and Arachne Central

    Java 1 Updated Dec 10, 2017
  • ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 31 29 Apache-2.0 Updated Dec 10, 2017
  • [Under development] OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

    Java 28 39 Apache-2.0 2 issues need help Updated Dec 8, 2017
  • CIRCE is a cohort definition and syntax compiler tool for OMOP CDMv5

    Java 1 5 Apache-2.0 Updated Dec 8, 2017
  • ETL-CDMBuilder is a repo containing a .NET application to perform ETL to OMOP CDMv4 for multiple databases

    C# 5 11 Apache-2.0 Updated Dec 8, 2017
  • Structure for standardizing evidence about drug-outcome relationship across disparate evidence soures

    R 1 1 Apache-2.0 Updated Dec 8, 2017
  • Definition and DDLs for the OMOP Common Data Model (CDM)

    Batchfile 110 84 Apache-2.0 3 issues need help Updated Dec 8, 2017
  • Commons module contains common code re-used between all Arachne components

    Java 3 Updated Dec 8, 2017
  • [under development] a open repository to host ARACHNE Common UI components

    JavaScript 2 1 Apache-2.0 Updated Dec 8, 2017
  • Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI

    PLpgSQL 1 2 Updated Dec 8, 2017
  • Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 15 13 Updated Dec 8, 2017
  • drat repository for OHDSI R packages

    3 2 Updated Dec 8, 2017
  • An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 21 16 Updated Dec 8, 2017
  • Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.

    Java 13 7 Apache-2.0 Updated Dec 8, 2017
  • Build process for OMOP Standardized Vocabularies. DO NOT clone or try to replicate. It is work in progress and not ready for replication.

    PLSQL 29 19 Unlicense Updated Dec 7, 2017
  • WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.

    Java 22 23 Apache-2.0 2 issues need help Updated Dec 7, 2017
  • An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.

    R 6 3 Updated Dec 7, 2017
  • Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database

    HTML 47 49 Updated Dec 6, 2017
  • Fork of the R ff package

    R 2 2 Updated Dec 6, 2017
  • Interactive web site for reviewing the results of the Achilles R package.

    JavaScript 12 31 Updated Dec 6, 2017
  • [Under development] Visualizations is a collection of JavaScript modules to support D3 visualizations in web-based applications

    JavaScript 3 3 Updated Dec 5, 2017
  • HTML 7 3 Updated Dec 5, 2017
  • An R package for generating features (covariates) for a cohort using data in the Common Data Model.

    R 7 17 Updated Dec 5, 2017
  • Broadsea deploys the full OHDSI technology stack (R methods library & web tools), using cross-platform Docker container technology.

    JavaScript 6 7 Apache-2.0 Updated Dec 4, 2017
  • This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.

    R 10 24 Updated Dec 4, 2017
  • An R package for performing empirical calibration of observational study estimates

    R 3 3 Updated Dec 4, 2017
  • An R package of support tools that didn’t fit other categories, including tools for maintaining R libraries.

    R 2 4 Updated Dec 2, 2017