@OHDSI

Observational Health Data Sciences and Informatics

  • An R package for connecting to databases using JDBC.

    R 8 23 Updated Apr 26, 2018
  • Network infrastructure for collaborative studies across disparate data nodes and researches

    CSS 8 3 Updated Apr 26, 2018
  • ETL code for converting Korean National Sample Cohort (NSC) derived from national insurance health service into OMOP-CDM v5 developed by Ajou University

    4 4 Apache-2.0 Updated Apr 26, 2018
  • [Under development] OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications

    Java 32 48 3 issues need help Updated Apr 25, 2018
  • An R package for performing patient level prediction.

    R 29 24 Updated Apr 25, 2018
  • This repository is for developing study packages for OHDSI studies. Once completed, they can be moved to the StudyProtocols repository.

    R 7 7 Updated Apr 25, 2018
  • Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database

    HTML 51 55 Updated Apr 25, 2018
  • ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

    JavaScript 45 39 Apache-2.0 Updated Apr 25, 2018
  • Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

    C++ 16 15 Updated Apr 25, 2018
  • Arachne Central middle-tier including Service API.

    Java 3 2 Updated Apr 25, 2018
  • A command line Java application for parsing MEDLINE XML files and inserting the data into a relational database

    Java 9 6 Apache-2.0 Updated Apr 25, 2018
  • [Under development] An R package for comparing patient-level predictions and prediction models

    R Updated Apr 24, 2018
  • drat repository for OHDSI R packages

    3 2 Updated Apr 24, 2018
  • Arachne Data Node is a component that facilitates connection and communication between local databases and Arachne Central

    Java 1 Updated Apr 24, 2018
  • [Under development] Visualizations is a collection of JavaScript modules to support D3 visualizations in web-based applications

    JavaScript 4 3 Updated Apr 24, 2018
  • Commons module contains common code re-used between all Arachne components

    Java 3 Updated Apr 24, 2018
  • An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

    R 26 17 Updated Apr 23, 2018
  • An R package of support tools that didn’t fit other categories, including tools for maintaining R libraries.

    R 2 6 Updated Apr 23, 2018
  • 8 4 Updated Apr 23, 2018
  • Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI

    PLpgSQL 2 2 Updated Apr 23, 2018
  • An R package to assist in the management of multiple CDM data sources for use in Atlas

    R 1 Updated Apr 19, 2018
  • Middle-tier of web application for distributing and browsing the Standardized Vocabularies for the OMOP CDM

    Java 4 3 Updated Apr 19, 2018
  • UI of web application for distributing and browsing the Standardized Vocabularies for the OMOP CDM

    TypeScript Updated Apr 19, 2018
  • An R package for performing empirical calibration of observational study estimates

    R 4 3 Updated Apr 19, 2018
  • This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.

    R 12 27 Updated Apr 19, 2018
  • An R package for generating features (covariates) for a cohort using data in the Common Data Model.

    R 11 19 Updated Apr 19, 2018
  • Application for Epidemiological Geographic Information System (AEGIS): a system for semi-automatic GIS visualization based on the OMOP Common Data Model.

    R 1 Updated Apr 19, 2018
  • [In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed against OMOP CDM

    Java 3 Apache-2.0 Updated Apr 17, 2018
  • CIRCE is a cohort definition and syntax compiler tool for OMOP CDMv5

    Java 1 5 Apache-2.0 Updated Apr 17, 2018
  • [under development] a open repository to host ARACHNE Common UI components

    JavaScript 2 1 Apache-2.0 Updated Apr 17, 2018