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PALLAS: Build process for OMOP Standardized Vocabularies. Currently not available as independent release. Therefore, do not clone or try to replicate. It is work in progress and not ready for replication.
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hardhouse Merge pull request #271 from OHDSI/LOINC-new-concept_classes-and-rela…
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LOINC new concept_classes and relationships
Latest commit 1566a2f Dec 6, 2019
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AMIS initial PostgreSQL-version of scripts commit Jul 17, 2018
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ATC Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
BDPM change logic for manual mappings Aug 4, 2018
CDM CDM bugfix Aug 2, 2019
CDT readme.md update Mar 11, 2019
CIEL Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
CPT4 added TRIM (CPT4) Nov 18, 2019
CVX readme.md update Mar 11, 2019
DA_France initial PostgreSQL-version of scripts commit Jul 17, 2018
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DRG initial PostgreSQL-version of scripts commit Jul 17, 2018
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ETC readme.md update Mar 11, 2019
EphMRA ATC readme.md update Mar 11, 2019
GCN_SEQNO Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
GGR readme.md update Mar 11, 2019
GPI Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
GRR updated comments and moved file May 4, 2019
Gemscript Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
HCPCS added TRIM to concept names Nov 11, 2019
HemOnc https://github.com//pull/249 Sep 5, 2019
ICD10 Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
ICD10CM Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
ICD10PCS Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
ICD9CM Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
ICD9Proc Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
ISBT readme.md update Mar 11, 2019
Indication Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
JMDC modify rtc to support refresh (#238) Jul 20, 2019
KCD7 refactoring KCD7 Nov 6, 2019
LOINC Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
LPD_Belgium Handle domain changes between releases Jun 7, 2019
MeSH Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
MedDRA Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
NDC_SPL Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
NFC readme.md update Mar 11, 2019
OPCS4 Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
OSM_US_Census added new vocabularies: OSM and US Census Mar 13, 2019
PPI last fix of ls Apr 23, 2019
Read Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
RxNorm Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
RxNorm_E Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
SNOMED Veterinary Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
SNOMED more manual changes + 1 new peak (SNOMED) Nov 13, 2019
UMLS UMLS readme update Oct 1, 2019
dmd Re-ordered AddFreshMAPSTO() and DeprecateWrongMAPSTO() due to bug dff… Oct 11, 2019
working LOINC new concept_classes and relationships Dec 6, 2019
LICENSE Initial commit Aug 25, 2014
README.md Update README.md Mar 26, 2019

README.md

Vocabulary

This repo contains the build process for the Standard Vocabularies, which is part of ATHENA. We will consolidate this with the download page at some point in the future.

You do not have to clone and run this to create a vocabulary. Instead, download all the necessary files from http://athena.ohdsi.org

If you do want to recreate the vocabulary please find the step-by-step description in each vocabulary's README.

Additional info form drug vocabularies: http://www.ohdsi.org/web/wiki/doku.php?id=documentation:international_drugs

Christian and the Odysseus Vocabulary Team. reich@ohdsi.org

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