The ospsuite.parameteridentification R package provides the functionality of performing parameter identification (i.e., fitting the model to observed data) with simulations created in the Open Systems Pharmacology Software tools PK-Sim and MoBi. The package requires the ospsuite package to run the simulations.
The package can be installed from GitHub using the {remotes} package.
Under Windows, simply run the following code:
# {ospsuite.parameteridentification} and its Open Systems Pharmacology Suite's dependencies relies on
# {rClr} (https://github.com/Open-Systems-Pharmacology/rClr) which is not
# available on CRAN.
# Therefore, these must be installed from github using `{remotes}`.
# You can skip this step if you have already installed the `{ospsuite`} package.
install.packages("remotes")
install.packages("https://github.com/Open-Systems-Pharmacology/rClr/releases/download/v0.9.2/rClr_0.9.2.zip",
type = "binary"
)
remotes::install_github("Open-Systems-Pharmacology/OSPSuite.ParameterIdentification@*release")Get the latest development version with:
remotes::install_github("Open-Systems-Pharmacology/OSPSuite.ParameterIdentification")For Linux, follow the instructions to install
{ospsuite}
first and then run
remotes::install_github("Open-Systems-Pharmacology/OSPSuite.ParameterIdentification@*release")(remove @*release to get the latest development version).
Examples of running parameter estimation tasks using this package are
detailed in vignette('user-guide').
Everyone interacting in the Open Systems Pharmacology community (codebases, issue trackers, chat rooms, mailing lists etc…) is expected to follow the Open Systems Pharmacology code of conduct.
We encourage contribution to the Open Systems Pharmacology community. Before getting started please read the contribution guidelines. If you are contributing code, please be familiar with the coding standards.
The {OSPSuite.ParameterIdentification} package is released under the
GPLv2 License.
All trademarks within this document belong to their legitimate owners.