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Qualification workflow template adjustments #756

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Yuri05 opened this issue Mar 31, 2022 · 0 comments
Closed
6 tasks

Qualification workflow template adjustments #756

Yuri05 opened this issue Mar 31, 2022 · 0 comments
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Yuri05 commented Mar 31, 2022

Extend the template https://github.com/Open-Systems-Pharmacology/OSPSuite.ReportingEngine/blob/develop/inst/extdata/qualification-workflow-template.R with:

  • add library(ospsuite.reportingengine) at the beginning
  • add optional usage of "max number of simulations per core per simulation set" (maxSimulationsPerCore parameter which is passed to the Simulate-Task)
  • add optional argument VersionInfo (s. Add new function AdjustTitlePage #755)
  • at the beginning of step3 (before workflow <- loadQualificationWorkflow): if the VersionInfo argument was provided: set titlePageFile = reInputFolder/Content/titlepage.md and call AdjustTitlePage(titlePageFile, versionInfo)
    #-------- STEP 3: Run Qualification Workflow --------#
    #' Load `QualificationWorkflow` object from configuration plan
    workflow <- loadQualificationWorkflow(
    workflowFolder = reOutputFolder,
    configurationPlanFile = configurationPlanFile
    )
  • add optional argument wordConversionTemplate, which can be then passed to the Pandoc for MD=>DOCX conversion
  • Before runWorkflow: add examples (commented out) how to deactivate some tasks (e.g. Simulate, CalculatePK, ..)
    #' Run the `QualificatitonWorklfow` tasklist of ConfigurationPlan
    workflow$runWorkflow()
@Yuri05 Yuri05 added this to To do in Version 2 via automation Mar 31, 2022
pchelle added a commit to pchelle/OSPSuite.ReportingEngine that referenced this issue Apr 8, 2022
@Yuri05 Yuri05 closed this as completed in 5594668 Apr 8, 2022
Version 2 automation moved this from To do to Done Apr 8, 2022
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