bel2rdf: Namespace in object of "hasConcept" triple missing

[mhsano]

The namespace in the object of the "hasConcept" triple is missing
Example:

http://www.openbel.org/bel/proteinAbundance_HGNC_SMN2> http://www.openbel.org/vocabulary/hasConcept http://www.openbel.org/bel/namespace//SMN2 .

I assume it should be something like http://www.openbel.org/bel/namespace/HGNC/SMN2

[abargnesi]

Thanks for reporting this.

The namespace prefix can be used to identify the RDF URI needed for conversion. They are unique within OpenBEL published namespaces, but you may have an issue if you DEFINE your own namespace using an existing prefix.

[abargnesi]

The above fix (on the next branch) will read the RDF URI from the 20150611 namespaces declared in bel.rb (see here).

[mhsano]

Could there be also a mapping to URIs from identifiers.org?

e.g. for entrezgene ids:

http://identifiers.org/ncbigene/12345

This would help with linking to other datasets

[abargnesi]

This is definitely on our radar since the dataset overlap is high. We would like to remove our http://www.openbel.org/bel/namespace/... URIs in favor of the equivalent http://identifiers.org/....

Let's start a new thread for this.

[abargnesi]

Merge over to master.

identifiers.org discussion moved to #65.