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BEL RDF 2.0: Design RDF schema for BEL, version 2.0. #13

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abargnesi opened this issue Mar 28, 2016 · 2 comments
Closed
8 tasks

BEL RDF 2.0: Design RDF schema for BEL, version 2.0. #13

abargnesi opened this issue Mar 28, 2016 · 2 comments
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@wshayes

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@abargnesi
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abargnesi commented Mar 28, 2016 •
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Background

An RDF representation is needed for BEL, version 2.0. This work should include design, documentation, and RDF schema triples (rdfs) required to encode BEL, version 2.0 concepts as triples.

Tasks

  • Design RDF model for BEL, version 2.0 constructs.
    • Variants
    • Protein cleavage fragments
    • Post-translational protein modifications
    • Translocations and cellular locations
    • Activity functions
    • Regulates relationship
    • Nanopub enhancements
      • "Evidence" annotation renamed to "Support"
      • Revisit supporting annotation domain (e.g. Anatomy) that comprise multiple datasets (e.g. MESH, UBERON). See conversation with @ncatlett.

Open questions

  • Do we encode BEL version at the nanopub level to enable reasoning across BEL, version 1.0 and 2.0?
@abargnesi
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Schema design estimate: 3 days (April 4th, end of day).

@wshayes
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wshayes commented Apr 9, 2016

OpenBEL/language@b130160

@wshayes wshayes closed this as completed Apr 9, 2016
@abargnesi abargnesi changed the title BEL RDF 2.0: Design and implement RDF schema for BEL, version 2.0. BEL RDF 2.0: Design RDF schema for BEL, version 2.0. Apr 19, 2016
@abargnesi abargnesi mentioned this issue Apr 19, 2016
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