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Manual tilt series with 2kx2k images #2119

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ercius opened this issue Aug 12, 2020 · 3 comments
Open

Manual tilt series with 2kx2k images #2119

ercius opened this issue Aug 12, 2020 · 3 comments

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@ercius
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ercius commented Aug 12, 2020

Describe the bug
The manual tilt series GUI shows the current projection image as white if the tilt series is as large as 2048x2048.

To Reproduce
Steps to reproduce the behavior:

  1. Create a tilt series with 2048x2048 images and save as npy
  2. Load the data file
  3. Set as tilt series
  4. Open manual tilt series GUI. The image in the upper left is pure white.
aa = np.zeros((2048,2048,5),dtype=np.uint8,order='F')
aa[0:100,0:100,:] = 100 # make it not all zeros
np.save(Path.home() / Path('test.npy'),aa)

Expected behavior
The projection image should be shown

Screenshots
Area to the left of the instruction should show a projection image
image

Here is the same data binned x2:
image

Desktop (please complete the following information):

  • Operating system: Windows 10
  • Tomviz version: 1.9.0

Hardware (please complete the following information):

  • Device: Razerstealth laptop
  • Graphics card: Integrated Intel or Nvidia. Not sure which is being used by tomviz
@cjh1
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cjh1 commented Aug 13, 2020

@ercius How many slices? Is the application still responsive?

@ercius
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ercius commented Aug 13, 2020 via email

@harsh07051
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I will like to take it up.

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3 participants