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/usr/bin/ld: final link failed: bad value while Building wheel for pyopendds (setup.py) ... error #39

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ApsaraGeek opened this issue Nov 29, 2021 · 1 comment · Fixed by #46
Closed

/usr/bin/ld: final link failed: bad value while Building wheel for pyopendds (setup.py) ... error #39

ApsaraGeek opened this issue Nov 29, 2021 · 1 comment · Fixed by #46

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@ApsaraGeek
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ApsaraGeek commented Nov 29, 2021 •
edited by iguessthislldo
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python version 3.8.12+
pip version 21.3.1
Ubuntu 20.04.3 LTS
When I try to "pip install . " opendds, I get the following error.

Processing /home/apsara/Videostreaming_v1/pyopendds_vs
  Preparing metadata (setup.py) ... done
Requirement already satisfied: jinja2 in /home/apsara/Videostreaming_v1/videnv/lib/python3.8/site-packages (from pyopendds==0.1.0) (3.0.3)
Requirement already satisfied: MarkupSafe>=2.0 in /home/apsara/Videostreaming_v1/videnv/lib/python3.8/site-packages (from jinja2->pyopendds==0.1.0) (2.0.1)
Building wheels for collected packages: pyopendds
  Building wheel for pyopendds (setup.py) ... error
  ERROR: Command errored out with exit status 1:
   command: /home/apsara/Videostreaming_v1/videnv/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/home/apsara/Videostreaming_v1/pyopendds_vs/setup.py'"'"'; __file__='"'"'/home/apsara/Videostreaming_v1/pyopendds_vs/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-jlra7w45
       cwd: /home/apsara/Videostreaming_v1/pyopendds_vs/
  Complete output (81 lines):
  /home/apsara/Videostreaming_v1/videnv/lib/python3.8/site-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'author-email' will not be supported in future versions. Please use the underscore name 'author_email' instead
    warnings.warn(
  /home/apsara/Videostreaming_v1/videnv/lib/python3.8/site-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'home-page' will not be supported in future versions. Please use the underscore name 'home_page' instead
    warnings.warn(
  /home/apsara/Videostreaming_v1/videnv/lib/python3.8/site-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'long-description' will not be supported in future versions. Please use the underscore name 'long_description' instead
    warnings.warn(
  /home/apsara/Videostreaming_v1/videnv/lib/python3.8/site-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'long-description-content-type' will not be supported in future versions. Please use the underscore name 'long_description_content_type' instead
    warnings.warn(
  /home/apsara/Videostreaming_v1/videnv/lib/python3.8/site-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'license-file' will not be supported in future versions. Please use the underscore name 'license_file' instead
    warnings.warn(
  running bdist_wheel
  running build
  running build_py
  creating build/lib.linux-x86_64-3.8
  creating build/lib.linux-x86_64-3.8/pyopendds
  copying pyopendds/DomainParticipant.py -> build/lib.linux-x86_64-3.8/pyopendds
  copying pyopendds/__init__.py -> build/lib.linux-x86_64-3.8/pyopendds
  copying pyopendds/exceptions.py -> build/lib.linux-x86_64-3.8/pyopendds
  copying pyopendds/constants.py -> build/lib.linux-x86_64-3.8/pyopendds
  copying pyopendds/Qos.py -> build/lib.linux-x86_64-3.8/pyopendds
  copying pyopendds/DataWriter.py -> build/lib.linux-x86_64-3.8/pyopendds
  copying pyopendds/DataReader.py -> build/lib.linux-x86_64-3.8/pyopendds
  copying pyopendds/Topic.py -> build/lib.linux-x86_64-3.8/pyopendds
  copying pyopendds/Subscriber.py -> build/lib.linux-x86_64-3.8/pyopendds
  copying pyopendds/init_opendds.py -> build/lib.linux-x86_64-3.8/pyopendds
  copying pyopendds/util.py -> build/lib.linux-x86_64-3.8/pyopendds
  copying pyopendds/Publisher.py -> build/lib.linux-x86_64-3.8/pyopendds
  creating build/lib.linux-x86_64-3.8/pyopendds/dev
  copying pyopendds/dev/__init__.py -> build/lib.linux-x86_64-3.8/pyopendds/dev
  copying pyopendds/dev/cmake.py -> build/lib.linux-x86_64-3.8/pyopendds/dev
  creating build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
  copying pyopendds/dev/itl2py/__init__.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
  copying pyopendds/dev/itl2py/PythonOutput.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
  copying pyopendds/dev/itl2py/CppOutput.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
  copying pyopendds/dev/itl2py/itl.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
  copying pyopendds/dev/itl2py/generate.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
  copying pyopendds/dev/itl2py/ast.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
  copying pyopendds/dev/itl2py/Output.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
  copying pyopendds/dev/itl2py/__main__.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
  creating build/lib.linux-x86_64-3.8/pyopendds/dev/include
  creating build/lib.linux-x86_64-3.8/pyopendds/dev/include/pyopendds
  copying pyopendds/dev/include/pyopendds/common.hpp -> build/lib.linux-x86_64-3.8/pyopendds/dev/include/pyopendds
  copying pyopendds/dev/include/pyopendds/user.hpp -> build/lib.linux-x86_64-3.8/pyopendds/dev/include/pyopendds
  creating build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py/templates
  copying pyopendds/dev/itl2py/templates/CMakeLists.txt -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py/templates
  copying pyopendds/dev/itl2py/templates/user.cpp -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py/templates
  copying pyopendds/dev/itl2py/templates/user.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py/templates
  copying pyopendds/dev/itl2py/templates/setup.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py/templates
  running build_ext
  -- The C compiler identification is GNU 9.4.0
  -- The CXX compiler identification is GNU 9.4.0
  -- Detecting C compiler ABI info
  -- Detecting C compiler ABI info - done
  -- Check for working C compiler: /usr/bin/cc - skipped
  -- Detecting C compile features
  -- Detecting C compile features - done
  -- Detecting CXX compiler ABI info
  -- Detecting CXX compiler ABI info - done
  -- Check for working CXX compiler: /usr/bin/c++ - skipped
  -- Detecting CXX compile features
  -- Detecting CXX compile features - done
  -- Found Python3: /usr/local/include/python3.8 (found version "3.8.12") found components: Development Development.Module Development.Embed
  -- Looking for pthread.h
  -- Looking for pthread.h - found
  -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
  -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
  -- Check if compiler accepts -pthread
  -- Check if compiler accepts -pthread - yes
  -- Found Threads: TRUE
  -- Configuring done
  -- Generating done
  -- Build files have been written to: /home/apsara/Videostreaming_v1/pyopendds_vs/build/temp.linux-x86_64-3.8
  [ 50%] Building CXX object CMakeFiles/_pyopendds.dir/_pyopendds.cpp.o
  [100%] Linking CXX shared library /home/apsara/Videostreaming_v1/pyopendds_vs/build/lib.linux-x86_64-3.8/_pyopendds.cpython-38-x86_64-linux-gnu.so
  /usr/bin/ld: /usr/local/lib/python3.8/config-3.8-x86_64-linux-gnu/libpython3.8.a(floatobject.o): relocation R_X86_64_PC32 against symbol `PyFloat_Type' can not be used when making a shared object; recompile with -fPIC
  /usr/bin/ld: final link failed: bad value
  collect2: error: ld returned 1 exit status
  make[2]: *** [CMakeFiles/_pyopendds.dir/build.make:106: /home/apsara/Videostreaming_v1/pyopendds_vs/build/lib.linux-x86_64-3.8/_pyopendds.cpython-38-x86_64-linux-gnu.so] Error 1
  make[1]: *** [CMakeFiles/Makefile2:83: CMakeFiles/_pyopendds.dir/all] Error 2
  make: *** [Makefile:91: all] Error 2
  error: "cmake --build . --config Debug" returned non-zero result: 2
  ----------------------------------------
  ERROR: Failed building wheel for pyopendds
  Running setup.py clean for pyopendds
Failed to build pyopendds
Installing collected packages: pyopendds
    Running setup.py install for pyopendds ... error
    ERROR: Command errored out with exit status 1:
     command: /home/apsara/Videostreaming_v1/videnv/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/home/apsara/Videostreaming_v1/pyopendds_vs/setup.py'"'"'; __file__='"'"'/home/apsara/Videostreaming_v1/pyopendds_vs/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-5qh40bdn/install-record.txt --single-version-externally-managed --compile --install-headers /home/apsara/Videostreaming_v1/videnv/include/site/python3.8/pyopendds
         cwd: /home/apsara/Videostreaming_v1/pyopendds_vs/
    Complete output (84 lines):
    /home/apsara/Videostreaming_v1/videnv/lib/python3.8/site-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'author-email' will not be supported in future versions. Please use the underscore name 'author_email' instead
      warnings.warn(
    /home/apsara/Videostreaming_v1/videnv/lib/python3.8/site-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'home-page' will not be supported in future versions. Please use the underscore name 'home_page' instead
      warnings.warn(
    /home/apsara/Videostreaming_v1/videnv/lib/python3.8/site-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'long-description' will not be supported in future versions. Please use the underscore name 'long_description' instead
      warnings.warn(
    /home/apsara/Videostreaming_v1/videnv/lib/python3.8/site-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'long-description-content-type' will not be supported in future versions. Please use the underscore name 'long_description_content_type' instead
      warnings.warn(
    /home/apsara/Videostreaming_v1/videnv/lib/python3.8/site-packages/setuptools/dist.py:717: UserWarning: Usage of dash-separated 'license-file' will not be supported in future versions. Please use the underscore name 'license_file' instead
      warnings.warn(
    running install
    /home/apsara/Videostreaming_v1/videnv/lib/python3.8/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
      warnings.warn(
    running build
    running build_py
    creating build
    creating build/lib.linux-x86_64-3.8
    creating build/lib.linux-x86_64-3.8/pyopendds
    copying pyopendds/DomainParticipant.py -> build/lib.linux-x86_64-3.8/pyopendds
    copying pyopendds/__init__.py -> build/lib.linux-x86_64-3.8/pyopendds
    copying pyopendds/exceptions.py -> build/lib.linux-x86_64-3.8/pyopendds
    copying pyopendds/constants.py -> build/lib.linux-x86_64-3.8/pyopendds
    copying pyopendds/Qos.py -> build/lib.linux-x86_64-3.8/pyopendds
    copying pyopendds/DataWriter.py -> build/lib.linux-x86_64-3.8/pyopendds
    copying pyopendds/DataReader.py -> build/lib.linux-x86_64-3.8/pyopendds
    copying pyopendds/Topic.py -> build/lib.linux-x86_64-3.8/pyopendds
    copying pyopendds/Subscriber.py -> build/lib.linux-x86_64-3.8/pyopendds
    copying pyopendds/init_opendds.py -> build/lib.linux-x86_64-3.8/pyopendds
    copying pyopendds/util.py -> build/lib.linux-x86_64-3.8/pyopendds
    copying pyopendds/Publisher.py -> build/lib.linux-x86_64-3.8/pyopendds
    creating build/lib.linux-x86_64-3.8/pyopendds/dev
    copying pyopendds/dev/__init__.py -> build/lib.linux-x86_64-3.8/pyopendds/dev
    copying pyopendds/dev/cmake.py -> build/lib.linux-x86_64-3.8/pyopendds/dev
    creating build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
    copying pyopendds/dev/itl2py/__init__.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
    copying pyopendds/dev/itl2py/PythonOutput.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
    copying pyopendds/dev/itl2py/CppOutput.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
    copying pyopendds/dev/itl2py/itl.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
    copying pyopendds/dev/itl2py/generate.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
    copying pyopendds/dev/itl2py/ast.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
    copying pyopendds/dev/itl2py/Output.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
    copying pyopendds/dev/itl2py/__main__.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py
    creating build/lib.linux-x86_64-3.8/pyopendds/dev/include
    creating build/lib.linux-x86_64-3.8/pyopendds/dev/include/pyopendds
    copying pyopendds/dev/include/pyopendds/common.hpp -> build/lib.linux-x86_64-3.8/pyopendds/dev/include/pyopendds
    copying pyopendds/dev/include/pyopendds/user.hpp -> build/lib.linux-x86_64-3.8/pyopendds/dev/include/pyopendds
    creating build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py/templates
    copying pyopendds/dev/itl2py/templates/CMakeLists.txt -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py/templates
    copying pyopendds/dev/itl2py/templates/user.cpp -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py/templates
    copying pyopendds/dev/itl2py/templates/user.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py/templates
    copying pyopendds/dev/itl2py/templates/setup.py -> build/lib.linux-x86_64-3.8/pyopendds/dev/itl2py/templates
    running build_ext
    -- The C compiler identification is GNU 9.4.0
    -- The CXX compiler identification is GNU 9.4.0
    -- Detecting C compiler ABI info
    -- Detecting C compiler ABI info - done
    -- Check for working C compiler: /usr/bin/cc - skipped
    -- Detecting C compile features
    -- Detecting C compile features - done
    -- Detecting CXX compiler ABI info
    -- Detecting CXX compiler ABI info - done
    -- Check for working CXX compiler: /usr/bin/c++ - skipped
    -- Detecting CXX compile features
    -- Detecting CXX compile features - done
    -- Found Python3: /usr/local/include/python3.8 (found version "3.8.12") found components: Development Development.Module Development.Embed
    -- Looking for pthread.h
    -- Looking for pthread.h - found
    -- Performing Test CMAKE_HAVE_LIBC_PTHREAD
    -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed
    -- Check if compiler accepts -pthread
    -- Check if compiler accepts -pthread - yes
    -- Found Threads: TRUE
    -- Configuring done
    -- Generating done
    -- Build files have been written to: /home/apsara/Videostreaming_v1/pyopendds_vs/build/temp.linux-x86_64-3.8
    [ 50%] Building CXX object CMakeFiles/_pyopendds.dir/_pyopendds.cpp.o
    [100%] Linking CXX shared library /home/apsara/Videostreaming_v1/pyopendds_vs/build/lib.linux-x86_64-3.8/_pyopendds.cpython-38-x86_64-linux-gnu.so
    /usr/bin/ld: /usr/local/lib/python3.8/config-3.8-x86_64-linux-gnu/libpython3.8.a(floatobject.o): relocation R_X86_64_PC32 against symbol `PyFloat_Type' can not be used when making a shared object; recompile with -fPIC
    /usr/bin/ld: final link failed: bad value
    collect2: error: ld returned 1 exit status
    make[2]: *** [CMakeFiles/_pyopendds.dir/build.make:106: /home/apsara/Videostreaming_v1/pyopendds_vs/build/lib.linux-x86_64-3.8/_pyopendds.cpython-38-x86_64-linux-gnu.so] Error 1
    make[1]: *** [CMakeFiles/Makefile2:83: CMakeFiles/_pyopendds.dir/all] Error 2
    make: *** [Makefile:91: all] Error 2
    error: "cmake --build . --config Debug" returned non-zero result: 2
    ----------------------------------------
ERROR: Command errored out with exit status 1: /home/apsara/Videostreaming_v1/videnv/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/home/apsara/Videostreaming_v1/pyopendds_vs/setup.py'"'"'; __file__='"'"'/home/apsara/Videostreaming_v1/pyopendds_vs/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-5qh40bdn/install-record.txt --single-version-externally-managed --compile --install-headers /home/apsara/Videostreaming_v1/videnv/include/site/python3.8/pyopendds Check the logs for full command output.```
@iguessthislldo
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Googling this error gives this gnuradio/gnuradio#4783 as one of the results. it seems that this is a problem when using a Python built from source, which it looks like you also have. It's not stated as a solution in the other issue, but I would suggest rebuilding Python with the --enable-shared configure option and reinstalling. Though I haven't knowingly tested this against a static Python library, I have used PyOpenDDS with Pythons built from source before without ever configuring it with --enable-shared, so there might be something more to it than that.

iguessthislldo added a commit to iguessthislldo/pyopendds that referenced this issue Mar 30, 2022
@iguessthislldo
Workaround for OpenDDS 3.20.0
d0f8a96 
OpenDDS/OpenDDS#3315 changed where
generated files are placed. Will need probably need long term solution.

Also:
- Workaround diegoferigo/cmake-build-extension#29
- Clarify apparent issue in OpenDDS#39
@iguessthislldo iguessthislldo mentioned this issue Mar 30, 2022
Merged
@iguessthislldo iguessthislldo linked a pull request Mar 30, 2022 that will close this issue
Workaround for OpenDDS 3.20.0 #46
Merged
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Workaround for OpenDDS 3.20.0 iguessthislldo/pyopendds
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@iguessthislldo @ApsaraGeek