Scripts for testing some of the software tools produced by the Open Tree of Life effort
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.gitignore
2globalconf.sh
2localconf.sh
LICENSE.txt
README.md
__init__.py
local.conf
opentreetesting.py
requirements.txt
run_taxomachine_tests.sh
run_tests.sh
run_treemachine_tests.sh
test.conf.example
test_gols_get_id_of_draft.py
test_gols_get_source_arguson.py
test_gols_get_source_newick.py
test_gols_get_study_ingest_messages.py
test_gols_get_synthetic_arguson.py
test_gols_tree_ids.py
test_taxo_argus_source.py
test_taxo_tnrs.py
test_to_nexson.py

README.md

opentree-testrunner

This repository is intended to house scripts for integration testing of software produced by the Open Tree of Life effort.

Installation

  1. Copy the file "test.conf.example" to "test.conf"
  2. Open "test.conf" in a text editor and tweak the settings (see below)
  3. cd to the top of the working tree
  4. pip install -r requirements.txt

Usage

sh run_test.sh

Settings

"test.conf" is read using Python's config parser. So to see the syntax rules refer to http://docs.python.org/library/configparser.html

See the peyotl repo wiki for details on the config options: https://github.com/OpenTreeOfLife/peyotl/wiki/configuration