How create new command for VnmrJ command line?

[trigchen]

I want to do some specific fid and spectra manipulation in current experiment.
How can I write a new command which can be run in VnmrJ command line?
I found there were a user guide for VNMR 6.1C source code (seen attachment). Is there anyone can share this document?

[tesch1]

All the manuals are available at SpinSights (free login required) here: https://spinsights.chem.agilent.com/community/resources/manuals/content

You'll probably want the "VnmrJ 4 User Programming Reference Guide" : https://spinsights.chem.agilent.com/docs/DOC-2127

[NeutralKaon]

To write a macro, just create a file with the name you desire in ~/vnmrsys/maclib and write in VnmrJ's simple scripting language, MAGICAL ("MAGnetics Instrumentation Control and Analysis Language", I think). You can also turn on macro debugging with 'debug('c3')' in the command line, and VnmrJ debugging with 'JFunc(55,'/a/path/to/a/TTY/or/file')'. These are things I wish people had told me when I started. All the best,

…

-- Jack

On 3 Nov 2017, at 09:10, Michael Tesch ***@***.***> wrote: All the manuals are available at SpinSights (free login required) here: https://spinsights.chem.agilent.com/community/resources/manuals/content <https://spinsights.chem.agilent.com/community/resources/manuals/content> You'll probably want the "VnmrJ 4 User Programming Reference Guide" : https://spinsights.chem.agilent.com/docs/DOC-2127 <https://spinsights.chem.agilent.com/docs/DOC-2127> — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#140 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/ARdrQzVxqx4qjI_v2M-Tbjhcr6fws4l_ks5sytiegaJpZM4QQv-I>.

[trigchen]

Thanks for the replies.
What I want to create is a built-in VNMR command which is the same as ft, aph, but not a MAGICAL macro.

[tesch1]

Probably the easiest way to do this is to write an external program that does your transformation, and write a macro that saves the current data, runs your program on the saved data, and then loads the result.

[trigchen]

external Unix program can't access the spectrum buffer in experiments.

[tesch1]

the 'flush' command can be used to write it to disk

[trigchen]

How about the processed FID before FFT to spectrum?

[DanIverson]

Check the fidproc command. /Vnmr/manual/fidproc. It has many FID processing tools. One can also add built-in commands. See the file table.c in src/vnmrbg I can give more details when I return from my vacation on Nov. 17

[trigchen]

Can anyone share the document "VNMR Source Code User Guide" (pdf format file) in the CD("VNMR 6.1 C Source Code") released with VNMR 6.1C ?