Merge branch 'feature/license_clarification' into develop

In theory, we should be up to date on all license information.  It
should be included in the manual, the installation, and the installers.

CMakeLists.txt

@@ -6,6 +6,12 @@ project(Optizelle)
 # 3.1.3 is what the current bug fix is, so that looks good enough. 
 cmake_minimum_required(VERSION 3.1.3 FATAL_ERROR)
 
+# Put together the complete license
+add_subdirectory(licenses)
+
+# Install the authors file 
+install(FILES AUTHORS.txt DESTINATION share/optizelle)
+
 # Set the CPack options
 set(CPACK_GENERATOR "TGZ")
 set(CPACK_PACKAGE_VENDOR "OptimoJoe")
@@ -15,7 +21,7 @@ set(CPACK_PACKAGE_VERSION_MINOR "1")
 set(CPACK_PACKAGE_VERSION_PATCH "5")
 set(CPACK_SOURCE_IGNORE_FILES "${CMAKE_BINARY_DIR}" "${CMAKE_SOURCE_DIR}/.git")
 set(CPACK_PACKAGE_INSTALL_DIRECTORY "Optizelle")
-set(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_SOURCE_DIR}/LICENSE.txt")
+set(CPACK_RESOURCE_FILE_LICENSE "${CMAKE_BINARY_DIR}/licenses/LICENSE.txt")
 set(CPACK_WIX_UPGRADE_GUID "9FB8001A-10E0-4FD1-9DC7-4B5415D6676E")
 set(CPACK_WIX_PATCH_FILE "${CMAKE_SOURCE_DIR}/src/CMake/WiX/patch.xml")
 set(CPACK_WIX_EXTENSIONS "WixUtilExtension")

licenses/CMakeLists.txt

@@ -0,0 +1,37 @@
+# Combine all the license information into a single file
+project(licenses)
+
+# Concatenates two files
+function(cat in out)
+    file(READ ${in} contents)
+    file(APPEND ${out} "${contents}")
+endfunction()
+
+# Includes a license into the overall license 
+set(out "${CMAKE_CURRENT_BINARY_DIR}/LICENSE.txt")
+file(REMOVE ${out})
+function(add_license package interface text)
+    file(APPEND ${out} "-~-~${package} (${interface})-~-~\n")
+    cat(${text} ${out})
+    file(APPEND ${out} "\n")
+endfunction()
+
+# Combine all the licenses
+add_license("Optizelle" "all interfaces" optizelle.txt)
+add_license("JsonCpp" "all interfaces" jsoncpp.txt)
+add_license("BLAS/LAPACK" "all interfaces when building default BLAS/LAPACK"
+    blas_lapack.txt)
+add_license("CMake" "all interfaces" cmake.txt)
+add_license("WiX" "all interfaces when building Windows installer" wix.txt)
+add_license("GCC" "All interfaces when using GCC.  Note, we do *not* modify the compiler.  See the GCC Runtime Library Exception." gcc.txt)
+add_license("GCC" "all interfaces when using GCC" gcc_runtime.txt)
+add_license("TeX Live" "documentation when using TeX Live for pdflatex"
+    texlive.txt)
+add_license("Python" "Python interface" python.txt)
+add_license("NumPy" "Python interface" numpy.txt)
+add_license("MATLAB" "MATLAB interface" matlab.txt)
+add_license("JSONlab" "MATLAB and/or Octave interface" jsonlab.txt)
+add_license("Octave" "Octave interface" octave.txt)
+
+# Install the license
+install(FILES ${out} DESTINATION share/optizelle)

licenses/blas_lapack.txt

@@ -0,0 +1,48 @@
+Copyright (c) 1992-2011 The University of Tennessee and The University
+                        of Tennessee Research Foundation.  All rights
+                        reserved.
+Copyright (c) 2000-2011 The University of California Berkeley. All
+                        rights reserved.
+Copyright (c) 2006-2012 The University of Colorado Denver.  All rights
+                        reserved.
+
+$COPYRIGHT$
+
+Additional copyrights may follow
+
+$HEADER$
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are
+met:
+
+- Redistributions of source code must retain the above copyright
+  notice, this list of conditions and the following disclaimer.
+
+- Redistributions in binary form must reproduce the above copyright
+  notice, this list of conditions and the following disclaimer listed
+  in this license in the documentation and/or other materials
+  provided with the distribution.
+
+- Neither the name of the copyright holders nor the names of its
+  contributors may be used to endorse or promote products derived from
+  this software without specific prior written permission.
+
+The copyright holders provide no reassurances that the source code
+provided does not infringe any patent, copyright, or any other
+intellectual property rights of third parties.  The copyright holders
+disclaim any liability to any recipient for claims brought against
+recipient by any third party for infringement of that parties
+intellectual property rights.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

licenses/cmake.txt

@@ -0,0 +1,57 @@
+CMake - Cross Platform Makefile Generator
+Copyright 2000-2016 Kitware, Inc.
+Copyright 2000-2011 Insight Software Consortium
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions
+are met:
+
+* Redistributions of source code must retain the above copyright
+  notice, this list of conditions and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright
+  notice, this list of conditions and the following disclaimer in the
+  documentation and/or other materials provided with the distribution.
+
+* Neither the names of Kitware, Inc., the Insight Software Consortium,
+  nor the names of their contributors may be used to endorse or promote
+  products derived from this software without specific prior written
+  permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+------------------------------------------------------------------------------
+
+The above copyright and license notice applies to distributions of
+CMake in source and binary form.  Some source files contain additional
+notices of original copyright by their contributors; see each source
+for details.  Third-party software packages supplied with CMake under
+compatible licenses provide their own copyright notices documented in
+corresponding subdirectories.
+
+------------------------------------------------------------------------------
+
+CMake was initially developed by Kitware with the following sponsorship:
+
+ * National Library of Medicine at the National Institutes of Health
+   as part of the Insight Segmentation and Registration Toolkit (ITK).
+
+ * US National Labs (Los Alamos, Livermore, Sandia) ASC Parallel
+   Visualization Initiative.
+
+ * National Alliance for Medical Image Computing (NAMIC) is funded by the
+   National Institutes of Health through the NIH Roadmap for Medical Research,
+   Grant U54 EB005149.
+
+ * Kitware, Inc.