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Wrong example name #50

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smoretti opened this issue Oct 4, 2019 · 1 comment
Open

Wrong example name #50

smoretti opened this issue Oct 4, 2019 · 1 comment

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@smoretti
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smoretti commented Oct 4, 2019

Hi
on the https://github.com/Oshlack/Lace/wiki/Usage-Documentation page the command
python Lace.py Example/Example_Genome.fasta Example/clusters.txt -t -o Test
does not work because it should be
python3 Lace.py Example/Example_Transcripts.fasta Example/clusters.txt -t -o Test

@smoretti
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smoretti commented Oct 4, 2019

Also the Checker.py example is wrong:
Should be python3 Checker.py --SuperFasta SuperDuper.fasta --SuperGff SuperDuper.gff I guess.

But in my case it returns:

Finding list of genes
Producing match to super transcript
Can't open SuperFiles/GeneB.fasta to read: No such file or directory
Producing match to super transcript
Can't open SuperFiles/GeneA.fasta to read: No such file or directory
ANNOCHECKED ---- 0.5776822566986084 seconds ----

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