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added cram option to exome bam pipeline #61

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merged 1 commit into from Apr 25, 2020
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bharatij
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Hi Harriet,
As per your suggestion, I added code to support cram files in STRetch_exome_bam_pipeline.groovy and creating a pull request.
Thanks,
Bharati

Added code to support cram files in STRetch_exome_bam_pipeline.groovy
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Codecov Report

Merging #61 into master will not change coverage.
The diff coverage is n/a.

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@@           Coverage Diff           @@
##           master      #61   +/-   ##
=======================================
  Coverage   90.29%   90.29%           
=======================================
  Files           4        4           
  Lines         371      371           
=======================================
  Hits          335      335           
  Misses         36       36           

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@hdashnow
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Wonderful, thank you!

Addresses #60

@hdashnow hdashnow merged commit ecbae77 into Oshlack:master Apr 25, 2020
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3 participants