FunctionReference

Filename	Output	Function name	Parameters	Description
add_colorbar.m		add_colorbar	handles col	Add colorbar
add_scalebar.m	mask	add_scalebar	handles cbcol img	Adding a scalebar
autoIso.m	isoVal	autoIso	vol	Automatic calculation of iso-surface value for volumetric data using Otsu's method
calcFIRE.m	FIRE se frcprofile frcprofile_f	calcFIRE	X Y res minX maxX minY maxY nTrials	Calculate the FIRE value from the specified X and Y vectors.
calcFIREh.m	frcprofile linx	calcFIREh	handles nTrials	Calculate the FIRE fetching the parameters from the GUI
calcFIRE_1D.m	FIRE se frcprofile frcprofile_f F frcprofile_est fSNR fSNR_RE	calcFIRE_1D	X res minX maxX nTrials	Calculate a variation of the FIRE for 1-dimensional data
calcHistogram.m	density n m X	calcHistogram	handles	Calculate histogram
calcHistogram_.m_	density n m X	calcHistogram	XPosition YPosition res minX maxX minY maxY	Calculates the histogram from the two vectors, within the specified bounds and with 'res' number of bins.
dbscan.m	class typ	dbscan	x k Eps	Clustering the data with Density-Based Scan Algorithm with Noise (DBSCAN)
dg_fit.m	fitresult go	dg_fit	x y w0	Performs a double-gaussian fit on the x and y vectors, with an optional initial estimation of the width w0.
double_gaussian_fit_1D.m	mu sigma w gof fit	double_gaussian_fit_1D	xs ys	Fits the data to a double Gaussian function
double_gaussian_fit_1D_plot.m	f	double_gaussian_fit_1D_plot	xs ys	Plots a gaussian fit for datapoints (xs,ys) in a new figure and returns the handle
fetch.m	varargout	fetch	varargin	Fetch variables from the workspace by name
freedmanDiaconis.m	nBins	freedmanDiaconis	data	Calculates the Freedman-Diaconis choice for the bin width. 'data' is assumed to be a single column vector.
fsize.m	siz	fsize	filename	Get file size.
gammaAdjust.m	imG	gammaAdjust	im gammaVal	Calculates gamma-adjusted image
gaussian_fit_1D.m	mu sigma gof fit	gaussian_fit_1D	xs ys	---
gaussian_fit_1D_plot.m				Plots a gaussian fit for datapoints (xs,ys) in a new figure and returns
getBounds.m	minX maxX minY max	getBounds	handles	---
getColHash.m	varargout	getColHash	varargin	---
getColormapName.m	cmap	getColormapName	handles	---
getDensity.m	density X	getDensity	handles	---
getF.m	frame	getF	handles	---
getFramebounds.m				maxFrame = getFramebounds(handles)
getGamma.m	gamma	getGamma	handles	Get the current gamma
getID.m	frame	getID	handles	---
getLength.m	L	getLength	handles	Get the current radius
getPalmSiever.m	h	getPalmSiever	handles	---
getPeakPosCentroid.m	pos amplitud	getPeakPosCentroid	im posGuess windowRadius	---
getPeakPosGauss2d.m	pos amplitud	getPeakPosGauss2d	im zeroCoord windowSize	---
getRadius.m	R	getRadius	handles	Get the current radius
getRes.m				This function gets the chosen image size in the resolution box
getSelectedRendering.m	str	getSelectedRendering	handles	---
getStormDrift3.m	drift corAmplitude	getStormDrift3	stormData minImPointPerArea minFrame stormPixSize SccfWindowArea imSize	---
getSubset.m	subset	getSubset	handles	---
getVariables.m	rows2 data	getVariables	handles N	---
getX.m	X	getX	handles	---
getY.m	Y	getY	handles	---
getZ.m	Z	getZ	handles	---
getZbounds.m	minZ max	getZbounds	handles	Given the figure's handles, the function returns the minimum and maximum values for the Z variable.
get_static_plugins.m	plugins	get_static_plugin	function plugins = get_static_plugin	Returns a list of plugins which should be
groupBy.m	gX	groupBy	X ID	---
grouping.m		grouping	handles	---
importprm.m				importprm(filename,delim)
jdg_fit.m	coeff scoeff fitresul	jdg_fit	x y amount N	---
jhist.m				Jittered histogram
kde2d.m	bandwidth density X	kde2d	data n MIN_XY MAX_XY	---
limit80.m		limit80	handles variable	Limits to central 80% of the data
logger.m				Logger function
matrix2html.m	str	matrix2html	M precision	Matrix to HTML table
nodiplib.m	ndl	nodiplib		---
ppdiff.m	qq	ppdiff	pp j	---
ppint.m	output	ppint	pp a b	---
q05.m	q	q05	x	q05
q10.m	q	q10	x	q10
q90.m	q	q90	x	q90
q95.m	q	q95	x	q95
quantile.m	q	quantile	data quantiles	QUANTILE
quantization.m				Quantization of signal x between xmin and xmax in N segments, indexed
radialSpectrum.m	PR PRx	radialSpectrum	X1 Y1 pxSize imSize	Calculate radial spectrum
removeAxisDrift.m	xc	removeAxisDrift	x t xDrift tUn	----------------------------------------------------
render_gauss.m	im	render_gauss	pxSize peaks sigma offsets outSize bounds	---
render_histogram.m	density X	render_histogram	handles	Render a histogram of the current view
serialize.m	ohandles	serialize	handles filename	---
setBounds.m				Sets the X,Y bounds
setFramebounds.m				Sets the Frame bounds
setMax.m		setMax	handles variable maximum	Set maximum for a specified variable
setMin.m		setMin	handles variable minimum	Set minimum for a specified variable
setPSVar.m		setPSVar	handles varAssignment	---
setX.m		setX	handles X	---
setY.m		setY	handles Y	---
setZ.m		setZ	handles Z	---
setZbounds.m				Sets the Z bounds
sg_fit.m				Single Gaussian fit
splinefit.m	pp	splinefit	varargin	---
stringToVarName.m	varNames	stringToVarName	strings	---
sumsqr.m				Elementwise sum of squares.
testImportAscii.m				---
trace.m				Tracing algorithm
trace_collect.m				Straighten and collect points along trace
trace_histogram.m				Calculate the histogram along a trace
trace_sigmas.m				Calculate sigmas along trace

Automatically generated (2014-07-11)