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Release 0.1.12 #490

Merged
merged 8 commits into from
Nov 20, 2020
Merged

Release 0.1.12 #490

merged 8 commits into from
Nov 20, 2020

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dweindl
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@dweindl dweindl commented Nov 20, 2020

  • Documentation update:
    • Added SBML2Julia to list of tools supporting PEtab
    • Extended PEtab introduction
    • Tutorial for creating PEtab files
  • Minor fix: Default argument for optional 'model' parameter in
    `petab.lint.check_condition_df`` (False positive invalid condition ID. #477)

dweindl and others added 8 commits November 8, 2020 18:39
The general comment was repeatedly overlooked. Therefore, now added directly to the respective field descriptions.
* Doc: Add 'scope' section and illustration of PEtab components

* Image to figure, add caption, update references

* fixup
* Add tutorial for creating PEtab files

* Formatting

* Table captions

* Lists of fields to real lists

* Highlight table headers

* Formatting

* Image to figure

* Added tutorial PEtab files

* fixed formatting

* Fix yaml formatting. Fix filenames.

* punct.

* update link

* Tutorial link to readme

* Added COPASI section to tutorial

* formatting, update sim section

* Fix empty table cells

* E

* Break overwide table

* fixup

* update readme 'using petab'

* add pdf generation script

* fix docs

* increase pdf margin

Co-authored-by: LeonardSchmiester <leonard.schmiester@helmholtz-muenchen.de>
Co-authored-by: yannikschaelte <yannik.schaelte@gmail.com>
* Prettify reaction arrows

* added Erikas comments

* Simons comments

* Highlight URLs in pdf

* chmod +x compile_tutorial.sh

* rewrap, typo

Co-authored-by: LeonardSchmiester <leonard.schmiester@helmholtz-muenchen.de>
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sonarcloud bot commented Nov 20, 2020

Kudos, SonarCloud Quality Gate passed!

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities (and Security Hotspot 0 Security Hotspots to review)
Code Smell A 0 Code Smells

No Coverage information No Coverage information
0.0% 0.0% Duplication

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codecov bot commented Nov 20, 2020

Codecov Report

Merging #490 (2687841) into master (f263174) will not change coverage.
The diff coverage is 100.00%.

Impacted file tree graph

@@           Coverage Diff           @@
##           master     #490   +/-   ##
=======================================
  Coverage   78.00%   78.00%           
=======================================
  Files          23       23           
  Lines        2301     2301           
  Branches      548      548           
=======================================
  Hits         1795     1795           
  Misses        370      370           
  Partials      136      136           
Impacted Files Coverage Δ
petab/lint.py 77.19% <ø> (ø)
petab/version.py 100.00% <100.00%> (ø)

Continue to review full report at Codecov.

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@dweindl dweindl merged commit 4d6d917 into master Nov 20, 2020
@dweindl dweindl deleted the release_0.1.12 branch November 20, 2020 14:09
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3 participants