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fix plink call
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nebfield committed Sep 27, 2023
1 parent 6825269 commit f27529e
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion .github/workflows/ancestry-vcf.yml
Expand Up @@ -63,7 +63,7 @@ jobs:

- name: Make VCF
run: |
plink2 --pfile ${{ env.ANCESTRY_TARGET_DIR }}/GRCh38_HAPNEST_TARGET_ALL vzs \
plink2 --pfile ${{ env.ANCESTRY_TARGET_DIR }}/GRCh38_HAPNEST_TARGET_ALL vzs \
--export vcf bgz \
--out ${{ env.ANCESTRY_TARGET_DIR }}/GRCh38_HAPNEST_TARGET_ALL

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