Version 1.0.6619

Release of internally used versions for proper referencing/validation of data used in publications.
Most significant changes since Release 1.0.5784:

• Output .mzid results in addition to the .tsv results
• Change MSPathFinder parameter '-m' to '-ic'
  • Input options are different for '-ic', so don't blindly change from '-m' to '-ic'!
  • '-m' option will still work with the same values (internally translated to '-ic' and proper value for '-ic')
• Improve code organization and move some functionality to separate DLLs
• Dynamic checks for the input formats supported by checking availability of MSFileReader and ProteoWizard
  • We officially support Thermo .raw and mzML created from Thermo .raw files (we test these usages)
  • Support for spectra files from other vendors is not currently tested, and may not work properly
• Updates to the .pbf file format (with support for reading older format .pbf files)
• Ignore capitalization when parsing modification names
• Change .NET requirement from 4.5 to 4.5.1
• Read ETciD and EThcd scans (Thermo Fusion Lumos) as ETD until further support is implemented
• Many other smaller changes

The zip file includes the PromexAlign application, which is not included in the installer.