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DMS Capture Task Manager
DMS Analysis Tool Manager
PRISM Data Management System database schema
Tool to merge split-fasta MS-GF+ search result mzids.
Merges the contents of a tab-delimited text file with peptide search results (e.g. from X!Tandem or MSGF+) with the corresponding MASIC results files, appending the relevant MASIC stats for each PSM. Also supports reporter ion abundances.
Used to de-isotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.
The AScore program can process first-hits or synopsis files from MSGF+, SEQUEST, or X!Tandem to compute confidence scores for the position of phosphorylated residues.
DMS Update Manager
MTS manager for retrieving files from MyEMSL
Creates a new storage folder for newly created data packages
The PRISM Class Library is a collection of routines used by many of the software tools that support the Data Management System at PNNL.
DMS Space Manager
Utility for generating plots of the mass measurement errors before and after processing with mzRefinery
Converts an mzIdentML created by MS-GF+ to a tab-delimited text file.
The Mage suite of tools provide access to DMS files and metadata.
all the materials for the publication about the Kaiko
Instrument directory scanner
Reads manager status messages from an ActiveMQ server and push them into the DMS database.
DataPackage Archive Manager
deep learning-based de novo peptide sequencing tool
Exports Sql Server database objects as schema files. Exported objects include tables, views, stored procedures, and functions,plus also database properties including database roles and logins. The program can also export table data to create SQL files with an Insert Into statement for each row.
The CPULoadTester can be used to simulate varying levels of load on a computer, by estimating the value of Pi, using either a single thread or multiple threads.
DMS Program Runner Service
Organism Database (FASTA file) programs, including PRISMSeq Uploader and the FastaFileMaker console application
DMS EMail Manager
The Protein Coverage Summarizer can be used to determine the percent of the residues in each protein sequence that have been identified, based on a list of identified peptides. A graphical user interface (GUI) is provided to allow the user to select the input files, set the options, and browse the coverage results.
The Peptide Hit Results Processor can be used to convert an X!Tandem results file (XML format), MSGF+ .tsv results file, or SEQUEST synopsis file (or first hits file) to a series of tab-delimited text files summarizing the results.
The File Comparison Sampler console application compares two or more files to check whether the start of the files match, the end of the files match, and selected sections inside the files also match. It is useful for comparing large files without reading the entire file. It also supports comparison of files in two directories.