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fixes-#2509-Removed-ncdf4.helpers-dependency #2511

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rahul799
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@rahul799 rahul799 commented Jan 9, 2020

Description

Motivation and Context

Review Time Estimate

  • Immediately
  • Within one week
  • [x ] When possible

Types of changes

  • [ x] Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to change)

Checklist:

  • My change requires a change to the documentation.
  • I have updated the CHANGELOG.md.
  • I have updated the documentation accordingly.
  • I have read the CONTRIBUTING document.
  • I have added tests to cover my changes.
  • All new and existing tests passed.

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@robkooper robkooper left a comment

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If ncdf4.helpers is no longer needed, can it be removed from the DEPENDENCIES as well?

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@ashiklom ashiklom left a comment

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Thanks for taking this on! I had a few suggested fixes. In addition, per @robkooper 's comment above, please remove ncdf4.helpers from any files where it is listed as a dependency so we no longer try to install it.

shiny/ViewMet/server.R Outdated Show resolved Hide resolved
models/jules/R/model2netcdf.JULES.R Outdated Show resolved Hide resolved
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Co-Authored-By: Alexey Shiklomanov <alexey.shiklomanov@gmail.com>
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@infotroph infotroph left a comment

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Thanks for taking this on! I see a couple of small changes, but they should be easy to do and once this is merged it will render #2510 moot.

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models/jules/R/model2netcdf.JULES.R Outdated Show resolved Hide resolved
models/jules/R/model2netcdf.JULES.R Outdated Show resolved Hide resolved
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rahul799 and others added 2 commits January 10, 2020 01:30
Co-Authored-By: Chris Black <chris@ckblack.org>
Co-Authored-By: Chris Black <chris@ckblack.org>
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Also, can you please add a line for this in the "changed" section of CHANGELOG.md? Possible phrasing:

- PEcAn.JULES: Removed dependency on `ncdf4.helpers` package, which has been removed from CRAN (#2511).

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@rahul799 Thanks, I think this is ready to go now

@mdietze Travis passes on oldrel, fails on R-release and R-devel from R documentation changes in R 3.6.2. Once all other reviewers have signed off, I suggest merging this now and resolving the documentation failure in a separate PR

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infotroph commented Jan 10, 2020

@rahul799 BTW, a timesaver for future PRs: I like that you're including issue numbers in your branch names and I suggest continuing that, but if you also mention the issue number somewhere in the text of the PR description then GitHub will automatically link to the issue page, which is nice for easy reference during review. And if you mention it in a form like "Fixes #2509", the issue will be closed automatically when the PR gets merged.

@infotroph infotroph changed the base branch from develop to no-inherit-base-doc January 10, 2020 13:11
@infotroph infotroph merged commit df1cf44 into PecanProject:no-inherit-base-doc Jan 10, 2020
@robkooper robkooper added this to the 1.8.0 milestone Apr 14, 2020
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4 participants