Analysis scripts for the BC zooplankton bioregionalization paper by Pata et al. in Progress in Oceanography (in press) and the methods paper in MethodsX (submitted).
The "Scripts" folder contains 20 files which were run in sequence to produce the outputs for the two manuscripts. Files 1-9 include the analyses for the MethodsX manuscript. Script files 1-4 include data curation steps. Files 5-6 contains the bioregionalization method selection and files 7-9 contains the robustness analysis. Files 10-20 contain the analyses for the Progress in Oceanography manuscript. A directory for the scripts files to produce the Progress in Oceanography tables and figures are provided below. File 6 outputs the supplementary metdatafile with bioregion assignment. Figures 2 and 9 were not generated from R scripts.
Main manuscript:
- Fig 1: file 10
- Fig 3: file 10
- Fig 4: file 11
- Fig 5: file 20
- Fig 6: file 14
- Fig 7: file 16
- Fig 8: file 17
- Table 1: file 7
- Table 2: file 12
- Table 3: file 15, file 16
Supplementary material:
- Fig S1: file 12
- Fig S2: file 10
- Fig S3: file 13
- Fig S4: file 12, matlab code (/Supp_Documents)
- Fig S5: file 19
- Fig S6: file 14
- Fig S7: file 17
- Table S1: file 18
- Table S2: file 15, file 16