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VCF Requirements

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Mark Woon edited this page May 23, 2016 · 13 revisions

We expect the incoming VCF files to have the following properties:

  • Build version must be specified in VCF metadata (using the assembly key in the contig header)
  • Build version must be b38 (i.e. GRCh38)
  • The CHROM field must be in the format chr##
  • All positions must be provided. If a required position is missing, it is assumed that the position could not be called.
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