CO_331:0000218 id is duplicated

[bellerbrock]

CO_331:0000218 is used as the id for both Storage root total marketable yield weight computation tons per ha and Weight of commercial storage roots. This is causing a conflict in sweetpotatobase (and maybe is also why the Weight of commercial storage roots trait is not visible on crop ontology?)

How can this be resolved? Weight of commercial storage root data is already stored in sweetpotatobase, so the temporary solution has been to exclude Storage root total marketable yield weight computation tons per ha from the working obo file.

[jaiswalp]

@elizabetharnaud @marieALaporte @cooperl09 Please check.

[cooperl09]

That ID is not in the the sweet potato ontology file which is in this repository. It looks like it was updated on the https://sweetpotatobase.org/ site in Sept. 2016. The files here have not been updated since Nov. 2015.

[jaiswalp]

This is interesting. Idea was to have all the edits recorded using the version control. Please confirm.

[bellerbrock]

@cooperl09 Right, the files on the master branch here haven't been updated since last fall. Maybe @c5sire or @omarbenites can push the edits and updates?

[cooperl09]

OK, That would be good. I can help if there are issues, or @marieALaporte could upload it as well.

[bellerbrock]

Ok, thanks. For background, to my knowledge the latest version was released in June 2016 on cropontology.org. There is a TraitDictionary file of that release that @c5sire sent me stored here in the sweetpotatobase branch. In September I converted it to .obo format with @marieALaporte in order to load it into sweetpotatobase. Problems like this showed up during that process, and new traits have been requested since. I don't know if this is the appropriate forum, but I thought I should at least track the issues somewhere where others can see!

[jaiswalp]

This is the right forum as we build resources.

Pankaj

On 11/17/2016 11:44 AM, Bryan Ellerbrock wrote:

Ok, thanks. For background, to my knowledge the latest version was
released in June 2016 on cropontology.org. There is a TraitDictionary
file of that release that @c5sire https://github.com/c5sire sent me
stored here in the sweetpotatobase branch. In September I converted it
to .obo format with @marieALaporte https://github.com/marieALaporte
in order to load it into sweetpotatobase. Problems like this showed up
during that process, and new traits have been requested since. I don't
know if this is the appropriate forum, but I thought I should at least
track the issues somewhere where others can see!

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Oregon State University
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email: jaiswalp@oregonstate.edu

[bellerbrock]

Fixed this is the working obo file by readding Storage root total marketable yield weight computation tons per ha with a different id. And closing it now as we're making the working obo file the new master file.