The Planteome Project

Repositories

• plant-trait-ontology

  Explore the Plant Trait Ontology on the Planteome site.
  Python 6 17 258 1 Updated Mar 3, 2021

• Ontology-Variable-Request-App
  Python 0 0 3 0 Updated Mar 1, 2021

• CO_350-oat-traits

  Oat trait dictionary developed by Crop Ontology, Oat Global, T3 and PepsiCO
  1 0 0 0 Updated Feb 25, 2021

• plant-experimental-conditions-ontology

  Repository for the Plant Experimental Conditions Ontology
  Python 2 3 13 0 Updated Feb 22, 2021

• soybase-ontology
  Roff 0 2 2 0 Updated Feb 19, 2021

• go-site-xrefs-fork

  Forked from geneontology/go-site

  Use this to add xrefs to metadata/db-xrefs.yaml and submit a pull request. Then they will be in the global xref file that AmiGO2 uses. Before making any changes, you need to update the fork to be consistent with the GO version. Use "git fetch upstream, git merge upstream/master, git push.
  Python BSD-3-Clause 84 0 1 0 Updated Feb 9, 2021

• CO_325-banana-traits

  Banana Trait Ontology maintained by Crop Ontology and Musabase
  Java 0 0 13 0 Updated Feb 5, 2021

• planteome-deep-segmenter-original
  Python 3 1 0 0 Updated Dec 14, 2020

• CO_331-sweetpotato-traits

  Sweetpotato Trait Ontology maintained by Crop Ontology and sweetpotatobase
  4 2 44 5 Updated Dec 11, 2020

• plant-ontology

  Repository for the Plant Ontology
  Makefile 10 26 101 2 Updated Dec 9, 2020

• CO_334-cassava-traits

  Cassava Trait Ontology maintained by Crop Ontology and Cassavabase
  1 0 31 0 Updated Dec 2, 2020

• CO_321-wheat-traits
  2 3 9 2 Updated Nov 20, 2020

• biolink-api

  Forked from biolink/biolink-api

  API for linked biological knowledge
  Python BSD-3-Clause 21 0 2 0 Updated Nov 9, 2020

• planteome-data-visualization

  Repository for the Data and Visualization working group
  XSLT 0 2 12 (1 issue needs help) 1 Updated Oct 29, 2020

• amigo

  Forked from geneontology/amigo

  This repo is the Planteome fork of geneontology.org AmiGO2 project. Issues in this repo should be reported only on AmiGO issues. Issues can be pushed upstream if relevant for GO.
  JavaScript BSD-3-Clause 10 1 11 0 Updated Oct 21, 2020

• planteome-core

  Repository (and tracker) for a planteome.owl importer for the whole project
  Makefile 0 1 1 0 Updated Oct 19, 2020

• CO_322-maize-traits
  0 2 5 0 Updated Oct 12, 2020

• CO_330-potato-traits
  0 0 1 0 Updated Sep 30, 2020

• CO_320-rice-traits
  0 2 4 2 Updated Sep 30, 2020

• planteome-annotation-data

  This is a place to discuss issues around the Planteome annotation data and store useful scripts etc.
  Perl 0 1 12 0 Updated Sep 9, 2020

• planteome-ncbi-taxonomy
  Perl 0 1 1 0 Updated Aug 13, 2020

• plant-stress-ontology

  An ontology containing biotic and abiotic plant stresses. Part of the Planteome suite of reference ontologies. Formerly called the Ontology of Plant Stress
  Jupyter Notebook 5 7 5 0 Updated Aug 13, 2020

• curate_site

  Drupal site for curate.planteome.org
  PHP 0 0 0 0 Updated May 6, 2020

• CO_343-yam-traits
  1 1 5 0 Updated Mar 24, 2020

• RTB-Ontology-Release-Tools

  Tools and guidelines for creating releases for RTB ontologies.
  Python 0 0 0 0 Updated Dec 4, 2019

• samara

  extracts plant trait data from open data sources like apsnet and ars-grin
  ASP MIT 3 3 22 0 Updated Sep 11, 2019

• planteome-analyses

  This is a place to store folders of results, and notes on analyses performed using the Planteome ontologies. Please collect the documents in a folder with an explicit name and date (e.g. fall-2015)
  0 0 0 0 Updated Apr 20, 2019

• CO_324-sorghum-traits
  0 0 0 0 Updated Mar 8, 2019

• CO_339-lentil-traits
  0 0 0 0 Updated Feb 26, 2019

• planteome-inca-form

  Configuration for the Planteome INCA

  tool trait owl ontology plant obo terminology
  Shell 2 0 0 0 Updated Jan 21, 2019