Update dependencies

PoisotLab · Mar 26, 2020 · d91dbe3 · d91dbe3
1 parent 1be2a12
commit d91dbe3
Showing 1 changed file with 128 additions and 75 deletions.
diff --git a/Manifest.toml b/Manifest.toml
@@ -1,3 +1,11 @@
+# This file is machine-generated - editing it directly is not advised
+
+[[AbstractTrees]]
+deps = ["Markdown"]
+git-tree-sha1 = "86d092c2599f1f7bb01668bf8eb3412f98d61e47"
+uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
+version = "0.3.2"
+
 [[Adapt]]
 deps = ["LinearAlgebra"]
 git-tree-sha1 = "c88cfc7f9c1f9f8633cddf0b56e86302b70f64c5"
@@ -11,38 +19,32 @@ uuid = "ec485272-7323-5ecc-a04f-4719b315124d"
 version = "0.0.4"
 
 [[Arpack]]
-deps = ["BinaryProvider", "Libdl", "LinearAlgebra"]
-git-tree-sha1 = "cd64c112638582ba4f0be9c3e20656499c508565"
+deps = ["Arpack_jll", "Libdl", "LinearAlgebra"]
+git-tree-sha1 = "2ff92b71ba1747c5fdd541f8fc87736d82f40ec9"
 uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97"
-version = "0.3.2"
+version = "0.4.0"
+
+[[Arpack_jll]]
+deps = ["Libdl", "OpenBLAS_jll", "Pkg"]
+git-tree-sha1 = "68a90a692ddc0eb72d69a6993ca26e2a923bf195"
+uuid = "68821587-b530-5797-8361-c406ea357684"
+version = "3.5.0+2"
 
 [[ArrayInterface]]
 deps = ["LinearAlgebra", "Requires", "SparseArrays"]
-git-tree-sha1 = "7b26f0015d9459082a16ebe3fe934c4abb8f1327"
+git-tree-sha1 = "3ffa20ffa495e9a4c823cb026164d8c0f95f72aa"
 uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
-version = "2.2.0"
+version = "2.6.2"
 
 [[Base64]]
 uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
-[[BinDeps]]
-deps = ["Libdl", "Pkg", "SHA", "URIParser", "Unicode"]
-git-tree-sha1 = "66158ad56b4bf6cc8413b37d0b7bc52402682764"
-uuid = "9e28174c-4ba2-5203-b857-d8d62c4213ee"
-version = "1.0.0"
-
 [[BinaryProvider]]
 deps = ["Libdl", "SHA"]
 git-tree-sha1 = "5b08ed6036d9d3f0ee6369410b830f8873d4024c"
 uuid = "b99e7846-7c00-51b0-8f62-c81ae34c0232"
 version = "0.5.8"
 
-[[Calculus]]
-deps = ["LinearAlgebra"]
-git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad"
-uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9"
-version = "0.5.1"
-
 [[ChainRulesCore]]
 deps = ["MuladdMacro"]
 git-tree-sha1 = "840cdd255e267a4dfcb14cecd872facb2997a326"
@@ -63,9 +65,21 @@ version = "0.2.0"
 
 [[Compat]]
 deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
-git-tree-sha1 = "2e23d71ad695ec28ca58ddd44869f07afa33cc76"
+git-tree-sha1 = "0198d18b28c093bef39872a22f1a897218a925f5"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "3.7.0"
+version = "3.8.0"
+
+[[CompilerSupportLibraries_jll]]
+deps = ["Libdl", "Pkg"]
+git-tree-sha1 = "067567a322fe466c5ec8d01413eee7127bd11699"
+uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
+version = "0.3.1+0"
+
+[[ConsoleProgressMonitor]]
+deps = ["Logging", "ProgressMeter"]
+git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8"
+uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b"
+version = "0.1.2"
 
 [[DataAPI]]
 git-tree-sha1 = "674b67f344687a88310213ddfa8a2b3c76cc4252"
@@ -87,23 +101,17 @@ deps = ["Mmap"]
 uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 
 [[DiffEqBase]]
-deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "Distributed", "DocStringExtensions", "FunctionWrappers", "IterativeSolvers", "IteratorInterfaceExtensions", "LinearAlgebra", "MuladdMacro", "Parameters", "Printf", "RecipesBase", "RecursiveArrayTools", "RecursiveFactorization", "Requires", "Roots", "SparseArrays", "StaticArrays", "Statistics", "SuiteSparse", "TableTraits", "TreeViews", "ZygoteRules"]
-git-tree-sha1 = "242055886f3712db6208e940e3ba3b863df2923f"
+deps = ["ArrayInterface", "ChainRulesCore", "ConsoleProgressMonitor", "DataStructures", "Distributed", "DocStringExtensions", "FunctionWrappers", "IterativeSolvers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "LoggingExtras", "MuladdMacro", "Parameters", "Printf", "ProgressLogging", "RecipesBase", "RecursiveArrayTools", "RecursiveFactorization", "Requires", "Roots", "SparseArrays", "StaticArrays", "Statistics", "SuiteSparse", "TableTraits", "TerminalLoggers", "TreeViews", "ZygoteRules"]
+git-tree-sha1 = "261b7acf18cbd4ffc13a15398bc579e1c9c26d5e"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.19.0"
+version = "6.25.1"
 
 [[DiffEqCallbacks]]
 deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "NLsolve", "OrdinaryDiffEq", "RecipesBase", "RecursiveArrayTools", "StaticArrays"]
 git-tree-sha1 = "3aadf5d6b987aaec2bb7421aba522df744609960"
 uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def"
 version = "2.12.1"
 
-[[DiffEqDiffTools]]
-deps = ["ArrayInterface", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays"]
-git-tree-sha1 = "951600cc05d9626c3282e2ed125492931596e430"
-uuid = "01453d9d-ee7c-5054-8395-0335cb756afa"
-version = "1.6.0"
-
 [[DiffResults]]
 deps = ["StaticArrays"]
 git-tree-sha1 = "da24935df8e0c6cf28de340b958f6aac88eaa0cc"
@@ -123,14 +131,14 @@ uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
 version = "0.8.2"
 
 [[Distributed]]
-deps = ["LinearAlgebra", "Random", "Serialization", "Sockets"]
+deps = ["Random", "Serialization", "Sockets"]
 uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
 
 [[Distributions]]
 deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"]
-git-tree-sha1 = "d5b170997483dcc19b6f153d15a21aae561eb754"
+git-tree-sha1 = "39756d6038ba28cc4228a40ab0d92bb2f7015ee8"
 uuid = "31c24e10-a181-5473-b8eb-7969acd0382f"
-version = "0.22.5"
+version = "0.23.1"
 
 [[DocStringExtensions]]
 deps = ["LibGit2", "Markdown", "Pkg", "Test"]
@@ -146,9 +154,9 @@ version = "1.6.0"
 
 [[FileIO]]
 deps = ["Pkg"]
-git-tree-sha1 = "2c84c57aced468fa21763c66d3bef33adcd09ec7"
+git-tree-sha1 = "3d7cb2c4c850439f19c4d6d3fbe1dce6481cddb1"
 uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549"
-version = "1.2.2"
+version = "1.2.4"
 
 [[FillArrays]]
 deps = ["LinearAlgebra", "Random", "SparseArrays"]
@@ -158,9 +166,9 @@ version = "0.8.5"
 
 [[FiniteDiff]]
 deps = ["ArrayInterface", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays"]
-git-tree-sha1 = "109cca539ac87b1b95538f539ed8eb7e3f35eee5"
+git-tree-sha1 = "f60e5d6944975f7140bde67278e10b6b01fb4f29"
 uuid = "6a86dc24-6348-571c-b903-95158fe2bd41"
-version = "2.1.0"
+version = "2.3.0"
 
 [[ForwardDiff]]
 deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "NaNMath", "Random", "SpecialFunctions", "StaticArrays"]
@@ -175,25 +183,24 @@ version = "1.1.1"
 
 [[GenericSVD]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "c59a30ef95fa4b5e0567c1911652e0c70a5d055c"
+git-tree-sha1 = "62909c3eda8a25b5673a367d1ad2392ebb265211"
 uuid = "01680d73-4ee2-5a08-a1aa-533608c188bb"
-version = "0.2.2"
+version = "0.3.0"
 
 [[Inflate]]
-deps = ["Pkg", "Printf", "Random", "Test"]
-git-tree-sha1 = "b7ec91c153cf8bff9aff58b39497925d133ef7fd"
+git-tree-sha1 = "f5fc07d4e706b84f72d54eedcc1c13d92fb0871c"
 uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9"
-version = "0.1.1"
+version = "0.1.2"
 
 [[InteractiveUtils]]
-deps = ["LinearAlgebra", "Markdown"]
+deps = ["Markdown"]
 uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
 
 [[IterativeSolvers]]
-deps = ["LinearAlgebra", "Printf", "Random", "RecipesBase", "SparseArrays", "Test"]
-git-tree-sha1 = "5687f68018b4f14c0da54d402bb23eecaec17f37"
+deps = ["LinearAlgebra", "Printf", "Random", "RecipesBase", "SparseArrays"]
+git-tree-sha1 = "f272a02b57a1a1d2150a1a6cc4a3441ee806ab96"
 uuid = "42fd0dbc-a981-5370-80f2-aaf504508153"
-version = "0.8.1"
+version = "0.8.3"
 
 [[IteratorInterfaceExtensions]]
 git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856"
@@ -212,6 +219,12 @@ git-tree-sha1 = "b34d7cef7b337321e97d22242c3c2b91f476748e"
 uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
 version = "0.21.0"
 
+[[LeftChildRightSiblingTrees]]
+deps = ["AbstractTrees"]
+git-tree-sha1 = "71be1eb5ad19cb4f61fa8c73395c0338fd092ae0"
+uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e"
+version = "0.1.2"
+
 [[LibGit2]]
 uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
 
@@ -237,11 +250,16 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 [[Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
+[[LoggingExtras]]
+git-tree-sha1 = "c867b50bfc564f0beded1c566f4fc66cfd8b5418"
+uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
+version = "0.4.0"
+
 [[MacroTools]]
-deps = ["DataStructures", "Markdown", "Random"]
-git-tree-sha1 = "07ee65e03e28ca88bc9a338a3726ae0c3efaa94b"
+deps = ["Markdown", "Random"]
+git-tree-sha1 = "f7d2e3f654af75f01ec49be82c231c382214223a"
 uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
-version = "0.5.4"
+version = "0.5.5"
 
 [[Markdown]]
 deps = ["Base64"]
@@ -262,10 +280,10 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221"
 version = "0.2.2"
 
 [[NLSolversBase]]
-deps = ["Calculus", "DiffEqDiffTools", "DiffResults", "Distributed", "ForwardDiff"]
-git-tree-sha1 = "f1b8ed89fa332f410cfc7c937682eb4d0b361521"
+deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"]
+git-tree-sha1 = "7c4e66c47848562003250f28b579c584e55becc0"
 uuid = "d41bc354-129a-5804-8e4c-c37616107c6c"
-version = "7.5.0"
+version = "7.6.1"
 
 [[NLsolve]]
 deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"]
@@ -278,23 +296,35 @@ git-tree-sha1 = "928b8ca9b2791081dc71a51c55347c27c618760f"
 uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
 version = "0.3.3"
 
+[[OpenBLAS_jll]]
+deps = ["Libdl", "Pkg"]
+git-tree-sha1 = "139adbff69e8149e68824994b68f06a61a5a2797"
+uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
+version = "0.3.7+8"
+
+[[OpenSpecFun_jll]]
+deps = ["CompilerSupportLibraries_jll", "Libdl", "Pkg"]
+git-tree-sha1 = "d51c416559217d974a1113522d5919235ae67a87"
+uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
+version = "0.5.3+3"
+
 [[OrderedCollections]]
 deps = ["Random", "Serialization", "Test"]
 git-tree-sha1 = "c4c13474d23c60d20a67b217f1d7f22a40edf8f1"
 uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
 version = "1.1.0"
 
 [[OrdinaryDiffEq]]
-deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "ExponentialUtilities", "FiniteDiff", "ForwardDiff", "GenericSVD", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Parameters", "RecursiveArrayTools", "Reexport", "SparseArrays", "SparseDiffTools", "StaticArrays"]
-git-tree-sha1 = "2c1f4b00c114766f7155b4df4529403339ce0e56"
+deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "ExponentialUtilities", "FiniteDiff", "ForwardDiff", "GenericSVD", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "NLsolve", "RecursiveArrayTools", "Reexport", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"]
+git-tree-sha1 = "8351ae59bb662f19464691823aaf8a235e8005db"
 uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
-version = "5.29.0"
+version = "5.32.0"
 
 [[PDMats]]
 deps = ["Arpack", "LinearAlgebra", "SparseArrays", "SuiteSparse", "Test"]
-git-tree-sha1 = "5f303510529486bb02ac4d70da8295da38302194"
+git-tree-sha1 = "2fc6f50ddd959e462f0a2dbc802ddf2a539c6e35"
 uuid = "90014a1f-27ba-587c-ab20-58faa44d9150"
-version = "0.9.11"
+version = "0.9.12"
 
 [[Parameters]]
 deps = ["OrderedCollections"]
@@ -309,13 +339,25 @@ uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
 version = "0.3.12"
 
 [[Pkg]]
-deps = ["Dates", "LibGit2", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"]
+deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Test", "UUIDs"]
 uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 
 [[Printf]]
 deps = ["Unicode"]
 uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 
+[[ProgressLogging]]
+deps = ["Logging", "SHA", "UUIDs"]
+git-tree-sha1 = "e47914361d124d8760f5e356403daeb7f3b81633"
+uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c"
+version = "0.1.2"
+
+[[ProgressMeter]]
+deps = ["Distributed", "Printf"]
+git-tree-sha1 = "ea1f4fa0ff5e8b771bf130d87af5b7ef400760bd"
+uuid = "92933f4c-e287-5a05-a399-4b506db050ca"
+version = "1.2.0"
+
 [[QuadGK]]
 deps = ["DataStructures", "LinearAlgebra"]
 git-tree-sha1 = "dc84e810393cfc6294248c9032a9cdacc14a3db4"
@@ -360,16 +402,22 @@ uuid = "ae029012-a4dd-5104-9daa-d747884805df"
 version = "1.0.1"
 
 [[Rmath]]
-deps = ["BinaryProvider", "Libdl", "Random", "Statistics"]
-git-tree-sha1 = "2bbddcb984a1d08612d0c4abb5b4774883f6fa98"
+deps = ["Random", "Rmath_jll"]
+git-tree-sha1 = "86c5647b565873641538d8f812c04e4c9dbeb370"
 uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa"
-version = "0.6.0"
+version = "0.6.1"
+
+[[Rmath_jll]]
+deps = ["Libdl", "Pkg"]
+git-tree-sha1 = "1660f8fefbf5ab9c67560513131d4e933012fc4b"
+uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f"
+version = "0.2.2+0"
 
 [[Roots]]
 deps = ["Printf"]
-git-tree-sha1 = "869a9990ec6347862d59040d00416ecd0683b965"
+git-tree-sha1 = "955ce06c1f424ca7043c7827f5cb14d8eb397065"
 uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665"
-version = "1.0.0"
+version = "1.0.1"
 
 [[SHA]]
 uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
@@ -401,16 +449,16 @@ deps = ["LinearAlgebra", "Random"]
 uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 
 [[SparseDiffTools]]
-deps = ["Adapt", "ArrayInterface", "Compat", "DataStructures", "DiffEqDiffTools", "ForwardDiff", "InteractiveUtils", "LightGraphs", "LinearAlgebra", "Requires", "SparseArrays", "VertexSafeGraphs"]
-git-tree-sha1 = "237cc8096814623d019587027d1bbc091ee40daf"
+deps = ["Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "InteractiveUtils", "LightGraphs", "LinearAlgebra", "Requires", "SparseArrays", "VertexSafeGraphs"]
+git-tree-sha1 = "6429f706e7da24a8c1c5e0416c3f0ce9974ab991"
 uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
-version = "1.1.1"
+version = "1.4.0"
 
 [[SpecialFunctions]]
-deps = ["BinDeps", "BinaryProvider", "Libdl"]
-git-tree-sha1 = "3bdd374b6fd78faf0119b8c5d538788dbf910c6e"
+deps = ["OpenSpecFun_jll"]
+git-tree-sha1 = "e19b98acb182567bcb7b75bb5d9eedf3a3b5ec6c"
 uuid = "276daf66-3868-5448-9aa4-cd146d93841b"
-version = "0.8.0"
+version = "0.10.0"
 
 [[StaticArrays]]
 deps = ["LinearAlgebra", "Random", "Statistics"]
@@ -435,7 +483,7 @@ uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
 version = "0.9.4"
 
 [[SuiteSparse]]
-deps = ["Libdl", "LinearAlgebra", "SparseArrays"]
+deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
 uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
 
 [[TableTraits]]
@@ -444,6 +492,12 @@ git-tree-sha1 = "b1ad568ba658d8cbb3b892ed5380a6f3e781a81e"
 uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
 version = "1.0.0"
 
+[[TerminalLoggers]]
+deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"]
+git-tree-sha1 = "8c05be75dfe73d90e5dfb6293e0c852013f7282d"
+uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed"
+version = "0.1.1"
+
 [[Test]]
 deps = ["Distributed", "InteractiveUtils", "Logging", "Random"]
 uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
@@ -460,16 +514,15 @@ git-tree-sha1 = "8d0d7a3fe2f30d6a7f833a5f19f7c7a5b396eae6"
 uuid = "a2a6695c-b41b-5b7d-aed9-dbfdeacea5d7"
 version = "0.3.0"
 
-[[URIParser]]
-deps = ["Test", "Unicode"]
-git-tree-sha1 = "6ddf8244220dfda2f17539fa8c9de20d6c575b69"
-uuid = "30578b45-9adc-5946-b283-645ec420af67"
-version = "0.4.0"
-
 [[UUIDs]]
-deps = ["Random"]
+deps = ["Random", "SHA"]
 uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
 
+[[UnPack]]
+git-tree-sha1 = "e0cb9715adda456f7657e45377fd3063bf87179a"
+uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed"
+version = "0.1.0"
+
 [[Unicode]]
 uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"