Fit transcriptional regulatory networks using gene expression, priors, machine learning
A service offering (relatively short) DNA sequences, by genone and chromosome location.
Large datasets for running auxiliary TReNA tests
The meme suite's fimo (find motif) as a microservice, written in python, with R and python clients
A collection of simple functions, in Python and R, providing access to remote computation and remote data.
A docker container to build snapr
an R package with miscellaneous functions and public data for the exploration and analysis of gene regulation
informal annotation of chromosomal locations
Code and files for performing transcription factor knockout and overexpression simulations on genome-scale regulatory-metabolic models using the updated PROM framework.
Processing data for the AMP-AD consortia
SNAPR: a bioinformatics pipeline for efficient and accurate RNA-seq alignment and analysis
AUREA: Adaptive Unified Relative Expression Analyser
ITEP - This is the version published and maintained by the Price Lab.