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pip install error with numpy 1.10.0-dev #366

Closed
habibrosyad opened this issue Jul 12, 2014 · 7 comments
Closed

pip install error with numpy 1.10.0-dev #366

habibrosyad opened this issue Jul 12, 2014 · 7 comments
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@avalentino
Labels
defect
Milestone
3.2

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@habibrosyad
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Hi, I've tried to install PyTables via pip but get this error instead:

[root@h1 ~]# pip install tables
Downloading/unpacking tables
  Real name of requirement tables is tables
  Downloading tables-3.1.1.tar.gz (6.7MB): 6.7MB downloaded
  Running setup.py (path:/tmp/pip_build_root/tables/setup.py) egg_info for package tables
    * Using Python 2.7.8 (default, Jul 12 2014, 15:10:31)
    .. ERROR:: You need numpy 1.4.1 or greater to run PyTables!
    Complete output from command python setup.py egg_info:
    * Using Python 2.7.8 (default, Jul 12 2014, 15:10:31)

.. ERROR:: You need numpy 1.4.1 or greater to run PyTables!

----------------------------------------
Cleaning up...
Command python setup.py egg_info failed with error code 1 in /tmp/pip_build_root/tables
Storing debug log for failure in /root/.pip/pip.log

The error indicate that I used numpy prior to 1.4.1, but in fact I've just upgrade my numpy to the latest version 1.10.0.dev-2ec3fc0:

[root@h1 ~]# pip list
backports.ssl-match-hostname (3.4.0.2)
Cython (0.20.2)
h5py (2.3.1)
ipython (2.1.0)
matplotlib (1.4.x)
mock (1.0.1)
mpi4py (1.3.1)
nose (1.3.3)
numexpr (2.4)
numpy (1.10.0.dev-2ec3fc0)
Pillow (2.5.1)
@avalentino avalentino added this to the 3.2 milestone Jul 12, 2014
@avalentino
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Hi @habibrosyad, thank you for reporting.
I suspect that the problem is related to incorrect version comparison:

In [1]: '0.9' < '0.10'
Out[1]: False

I will fix it ASAP.

@avalentino avalentino self-assigned this Jul 12, 2014
alimuldal pushed a commit to alimuldal/PyTables that referenced this issue Apr 1, 2015
@avalentino @alimuldal
Fix version checking in setup.py (closes PyTables#366)
1011a0e 
Compatibility with numpy 1.10.
@bixu
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bixu commented Jul 5, 2016

I'm also seeing this. In my case, I have numpy 1.9.1:

pip freeze | grep numpy
numpy==1.9.1

@tomkooij
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tomkooij commented Jul 5, 2016

I cannot reproduce this. I tried numpy==1.9.1 on python 3.4 (no numpy 1.9 package for python 3.5 on conda)

$ pip install tables-3.2.3.1.tar.gz
Processing ./tables-3.2.3.1.tar.gz
Requirement already satisfied (use --upgrade to upgrade): numpy>=1.8.0 in 
[...]
Successfully built tables
Installing collected packages: numexpr, tables
Successfully installed numexpr-2.6.0 tables-3.2.3.1
$ pip freeze
numexpr==2.6.0
numpy==1.9.1
tables==3.2.3.1

@tomkooij
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tomkooij commented Jul 6, 2016

@bixu: I cannot reproduce this problem on python 2.7 or 3.4. Please post a full log of the pip install process, including a full pip freeze output, python versions, OS, etc.

@bixu
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bixu commented Jul 30, 2016

@tomkooij, I'm working inside of a Habitat (http://habitat.sh) build environment. The pip install section of the build is:

   for module in $(cat /src/requirements.txt | grep -v nsible); do
     pip install --target ${pkg_prefix}/lib/python2.7/site-packages --cert $(pkg_path_for core/cacerts)/ssl/certs/cacert.pem $module
   done

requirements.txt (some private modules redacted):

Babel==2.2.0
Cython==0.23.4
Flask-Autodoc==0.1.2
Flask-SQLALchemy==2.0
Flask==0.10.1
Jinja2==2.7.3
Mako==1.0.1
MarkupSafe==0.23
SQLAlchemy==1.0.12
Werkzeug==0.10.4
alembic==0.8.1
ansible==1.8.2
argparse==1.2.1
bcrypt==3.1.0
boto3==1.2.2
boto==2.38.0
celery==3.1.23
click==6.2
greenlet==0.4.7
itsdangerous==0.24
numexpr==2.6.1
numpy==1.9.1
pandas==0.16.2
pdfkit==0.5.0
perfmetrics==2.0
prettytable==0.7.2
psycopg2==2.5.4
python-dateutil==2.4.0
pytz==2014.10
requests[security]==2.7.0
redis==2.10.5
scikit-learn==0.15.2
scipy==0.15.0
setuptools==17.1
six==1.9.0
structlog==16.0.0
tables==3.1.1
termcolor==1.1.0
uwsgi==2.0.11.2
wsgiref==0.1.2

stdout from the install:

Collecting Babel==2.2.0
  Downloading Babel-2.2.0-py2.py3-none-any.whl (6.5MB)
    100% |################################| 6.5MB 124kB/s
Collecting pytz>=0a (from Babel==2.2.0)
  Downloading pytz-2016.6.1-py2.py3-none-any.whl (481kB)
    100% |################################| 481kB 840kB/s
Installing collected packages: pytz, Babel
Successfully installed Babel pytz
Collecting Cython==0.23.4
  Downloading Cython-0.23.4-cp27-cp27m-manylinux1_x86_64.whl (5.6MB)
    100% |################################| 5.6MB 155kB/s
Installing collected packages: Cython
Successfully installed Cython
Collecting Flask-Autodoc==0.1.2
  Downloading Flask-Autodoc-0.1.2.tar.gz
Collecting Flask (from Flask-Autodoc==0.1.2)
  Downloading Flask-0.11.1-py2.py3-none-any.whl (80kB)
    100% |################################| 81kB 1.4MB/s
Collecting itsdangerous>=0.21 (from Flask->Flask-Autodoc==0.1.2)
  Downloading itsdangerous-0.24.tar.gz (46kB)
    100% |################################| 51kB 5.6MB/s
Collecting click>=2.0 (from Flask->Flask-Autodoc==0.1.2)
  Downloading click-6.6.tar.gz (283kB)
    100% |################################| 286kB 993kB/s
Collecting Jinja2>=2.4 (from Flask->Flask-Autodoc==0.1.2)
  Downloading Jinja2-2.8-py2.py3-none-any.whl (263kB)
    100% |################################| 266kB 3.8MB/s
Collecting Werkzeug>=0.7 (from Flask->Flask-Autodoc==0.1.2)
  Downloading Werkzeug-0.11.10-py2.py3-none-any.whl (306kB)
    100% |################################| 307kB 177kB/s
Collecting MarkupSafe (from Jinja2>=2.4->Flask->Flask-Autodoc==0.1.2)
  Downloading MarkupSafe-0.23.tar.gz
Building wheels for collected packages: Flask-Autodoc, itsdangerous, click, MarkupSafe
  Running setup.py bdist_wheel for Flask-Autodoc ... done
  Stored in directory: /root/.cache/pip/wheels/66/b4/7b/9943c72f5a488d6da719f337f268a637bca54fabfbcd21f520
  Running setup.py bdist_wheel for itsdangerous ... done
  Stored in directory: /root/.cache/pip/wheels/fc/a8/66/24d655233c757e178d45dea2de22a04c6d92766abfb741129a
  Running setup.py bdist_wheel for click ... done
  Stored in directory: /root/.cache/pip/wheels/b0/6d/8c/cf5ca1146e48bc7914748bfb1dbf3a40a440b8b4f4f0d952dd
  Running setup.py bdist_wheel for MarkupSafe ... done
  Stored in directory: /root/.cache/pip/wheels/a3/fa/dc/0198eed9ad95489b8a4f45d14dd5d2aee3f8984e46862c5748
Successfully built Flask-Autodoc itsdangerous click MarkupSafe
Installing collected packages: itsdangerous, click, MarkupSafe, Jinja2, Werkzeug, Flask, Flask-Autodoc
Successfully installed Flask Flask-Autodoc Jinja2 MarkupSafe Werkzeug click itsdangerous
Collecting Flask-SQLALchemy==2.0
  Downloading Flask-SQLAlchemy-2.0.tar.gz (93kB)
    100% |################################| 102kB 1.1MB/s
Collecting Flask>=0.10 (from Flask-SQLALchemy==2.0)
  Using cached Flask-0.11.1-py2.py3-none-any.whl
Collecting SQLAlchemy (from Flask-SQLALchemy==2.0)
  Downloading SQLAlchemy-1.0.14.tar.gz (4.8MB)
    100% |################################| 4.8MB 184kB/s
Collecting itsdangerous>=0.21 (from Flask>=0.10->Flask-SQLALchemy==2.0)
Collecting click>=2.0 (from Flask>=0.10->Flask-SQLALchemy==2.0)
Collecting Jinja2>=2.4 (from Flask>=0.10->Flask-SQLALchemy==2.0)
  Using cached Jinja2-2.8-py2.py3-none-any.whl
Collecting Werkzeug>=0.7 (from Flask>=0.10->Flask-SQLALchemy==2.0)
  Using cached Werkzeug-0.11.10-py2.py3-none-any.whl
Collecting MarkupSafe (from Jinja2>=2.4->Flask>=0.10->Flask-SQLALchemy==2.0)
Building wheels for collected packages: Flask-SQLALchemy, SQLAlchemy
  Running setup.py bdist_wheel for Flask-SQLALchemy ... done
  Stored in directory: /root/.cache/pip/wheels/50/1e/1d/4ad1cd5ed55ceba81544b67d7d79544a660a7bde5a43d518d8
  Running setup.py bdist_wheel for SQLAlchemy ... done
  Stored in directory: /root/.cache/pip/wheels/b6/33/08/eb7224f6053d6abd5bbdd41628505b5af881a6b7828060a6b3
Successfully built Flask-SQLALchemy SQLAlchemy
Installing collected packages: itsdangerous, click, MarkupSafe, Jinja2, Werkzeug, Flask, SQLAlchemy, Flask-SQLALchemy
Successfully installed Flask-0.11.1 Flask-SQLALchemy Jinja2-2.8 MarkupSafe-0.23 SQLAlchemy Werkzeug-0.11.10 click-6.6 itsdangerous-0.24
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/jinja2 already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/itsdangerous.pyc already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/Flask-0.11.1.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/click already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/Werkzeug-0.11.10.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/flask already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/markupsafe already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/itsdangerous.py already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/itsdangerous-0.24.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/MarkupSafe-0.23.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/werkzeug already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/Jinja2-2.8.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/click-6.6.dist-info already exists. Specify --upgrade to force replacement.
Collecting Flask==0.10.1
  Downloading Flask-0.10.1.tar.gz (544kB)
    100% |################################| 552kB 1.0MB/s
Collecting Werkzeug>=0.7 (from Flask==0.10.1)
  Using cached Werkzeug-0.11.10-py2.py3-none-any.whl
Collecting Jinja2>=2.4 (from Flask==0.10.1)
  Using cached Jinja2-2.8-py2.py3-none-any.whl
Collecting itsdangerous>=0.21 (from Flask==0.10.1)
Collecting MarkupSafe (from Jinja2>=2.4->Flask==0.10.1)
Building wheels for collected packages: Flask
  Running setup.py bdist_wheel for Flask ... done
  Stored in directory: /root/.cache/pip/wheels/b6/09/65/5fcf16f74f334a215447c26769e291c41883862fe0dc7c1430
Successfully built Flask
Installing collected packages: Werkzeug, MarkupSafe, Jinja2, itsdangerous, Flask
Successfully installed Flask-0.11.1 Jinja2-2.8 MarkupSafe-0.23 Werkzeug-0.11.10 itsdangerous-0.24
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/jinja2 already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/itsdangerous.pyc already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/Werkzeug-0.11.10.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/flask already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/markupsafe already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/itsdangerous.py already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/itsdangerous-0.24.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/MarkupSafe-0.23.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/werkzeug already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/Jinja2-2.8.dist-info already exists. Specify --upgrade to force replacement.
Collecting Jinja2==2.7.3
  Downloading Jinja2-2.7.3.tar.gz (378kB)
    100% |################################| 378kB 235kB/s
Collecting markupsafe (from Jinja2==2.7.3)
Building wheels for collected packages: Jinja2
  Running setup.py bdist_wheel for Jinja2 ... done
  Stored in directory: /root/.cache/pip/wheels/ea/d6/b1/389cd2f50d24ce359eb1f4005965da619ef62316226b2d430d
Successfully built Jinja2
Installing collected packages: markupsafe, Jinja2
Successfully installed Jinja2-2.8 markupsafe-0.23
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/jinja2 already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/markupsafe already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/MarkupSafe-0.23.dist-info already exists. Specify --upgrade to force replacement.
Collecting Mako==1.0.1
  Downloading Mako-1.0.1.tar.gz (473kB)
    100% |################################| 481kB 772kB/s
Collecting MarkupSafe>=0.9.2 (from Mako==1.0.1)
Building wheels for collected packages: Mako
  Running setup.py bdist_wheel for Mako ... done
  Stored in directory: /root/.cache/pip/wheels/e8/8c/81/be4ecb1224c2ddc25772b156d5e5faab8b6769f30aa50b720e
Successfully built Mako
Installing collected packages: MarkupSafe, Mako
Successfully installed Mako MarkupSafe-0.23
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/markupsafe already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/MarkupSafe-0.23.dist-info already exists. Specify --upgrade to force replacement.
Collecting MarkupSafe==0.23
Installing collected packages: MarkupSafe
Successfully installed MarkupSafe-0.23
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/markupsafe already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/MarkupSafe-0.23.dist-info already exists. Specify --upgrade to force replacement.
Collecting SQLAlchemy==1.0.12
  Downloading SQLAlchemy-1.0.12.tar.gz (4.7MB)
    100% |################################| 4.8MB 182kB/s
Building wheels for collected packages: SQLAlchemy
  Running setup.py bdist_wheel for SQLAlchemy ... done
  Stored in directory: /root/.cache/pip/wheels/eb/90/c8/fc08769bc10c0e47ec6e71d998c5ee074b0580bf214b2e9ef0
Successfully built SQLAlchemy
Installing collected packages: SQLAlchemy
Successfully installed SQLAlchemy-1.0.14
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/sqlalchemy already exists. Specify --upgrade to force replacement.
Collecting Werkzeug==0.10.4
  Downloading Werkzeug-0.10.4-py2.py3-none-any.whl (293kB)
    100% |################################| 296kB 1.2MB/s
Installing collected packages: Werkzeug
Successfully installed Werkzeug-0.11.10
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/werkzeug already exists. Specify --upgrade to force replacement.
Collecting alembic==0.8.1
  Downloading alembic-0.8.1.tar.gz (930kB)
    100% |################################| 931kB 946kB/s
Collecting SQLAlchemy>=0.7.6 (from alembic==0.8.1)
Collecting Mako (from alembic==0.8.1)
  Downloading Mako-1.0.4.tar.gz (574kB)
    100% |################################| 583kB 941kB/s
Collecting python-editor>=0.3 (from alembic==0.8.1)
  Downloading python-editor-1.0.1.tar.gz
Collecting MarkupSafe>=0.9.2 (from Mako->alembic==0.8.1)
Building wheels for collected packages: alembic, Mako, python-editor
  Running setup.py bdist_wheel for alembic ... done
  Stored in directory: /root/.cache/pip/wheels/97/72/c1/1ffdfdd76989745cd284316ba226eb8cbf39d31bc8c4c0bd67
  Running setup.py bdist_wheel for Mako ... done
  Stored in directory: /root/.cache/pip/wheels/2a/fa/9a/7030d96d3c51f433848e4cd67a353a411ba6deb5c14e150730
  Running setup.py bdist_wheel for python-editor ... done
  Stored in directory: /root/.cache/pip/wheels/c2/49/ce/59657468e42b41eb86aa654650afdf5fe891822a0dc376eebe
Successfully built alembic Mako python-editor
Installing collected packages: SQLAlchemy, MarkupSafe, Mako, python-editor, alembic
Successfully installed Mako-1.0.1 MarkupSafe-0.23 SQLAlchemy-1.0.12 alembic python-editor
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/sqlalchemy already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/markupsafe already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/SQLAlchemy-1.0.14.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/MarkupSafe-0.23.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/mako already exists. Specify --upgrade to force replacement.
Collecting argparse==1.2.1
  Downloading argparse-1.2.1.tar.gz (69kB)
    100% |################################| 71kB 102kB/s
Building wheels for collected packages: argparse
  Running setup.py bdist_wheel for argparse ... done
  Stored in directory: /root/.cache/pip/wheels/0c/98/89/7494d5db3af34dc96bba5bff3bf8a8f38eeeab5291ec174cc3
Successfully built argparse
Installing collected packages: argparse
Successfully installed argparse
Collecting bcrypt==3.1.0
  Downloading bcrypt-3.1.0-cp27-cp27m-manylinux1_x86_64.whl (57kB)
    100% |################################| 61kB 163kB/s
Collecting cffi>=1.1 (from bcrypt==3.1.0)
  Downloading cffi-1.7.0-cp27-cp27m-manylinux1_x86_64.whl (386kB)
    100% |################################| 389kB 279kB/s
Collecting six>=1.4.1 (from bcrypt==3.1.0)
  Downloading six-1.10.0-py2.py3-none-any.whl
Collecting pycparser (from cffi>=1.1->bcrypt==3.1.0)
  Downloading pycparser-2.14.tar.gz (223kB)
    100% |################################| 225kB 935kB/s
Building wheels for collected packages: pycparser
  Running setup.py bdist_wheel for pycparser ... done
  Stored in directory: /root/.cache/pip/wheels/9b/f4/2e/d03e949a551719a1ffcb659f2c63d8444f4df12e994ce52112
Successfully built pycparser
Installing collected packages: pycparser, cffi, six, bcrypt
Successfully installed bcrypt cffi pycparser six
Collecting boto3==1.2.2
  Downloading boto3-1.2.2-py2.py3-none-any.whl (106kB)
    100% |################################| 112kB 1.2MB/s
Collecting futures==2.2.0; python_version == "2.6" or python_version == "2.7" (from boto3==1.2.2)
  Downloading futures-2.2.0-py2.py3-none-any.whl
Collecting botocore<1.4.0,>=1.3.0 (from boto3==1.2.2)
  Downloading botocore-1.3.30-py2.py3-none-any.whl (2.2MB)
    100% |################################| 2.2MB 351kB/s
Collecting jmespath<1.0.0,>=0.7.1 (from boto3==1.2.2)
  Downloading jmespath-0.9.0-py2.py3-none-any.whl
Collecting python-dateutil<3.0.0,>=2.1 (from botocore<1.4.0,>=1.3.0->boto3==1.2.2)
  Downloading python_dateutil-2.5.3-py2.py3-none-any.whl (201kB)
    100% |################################| 204kB 2.0MB/s
Collecting docutils>=0.10 (from botocore<1.4.0,>=1.3.0->boto3==1.2.2)
  Downloading docutils-0.12.tar.gz (1.6MB)
    100% |################################| 1.6MB 447kB/s
Collecting six>=1.5 (from python-dateutil<3.0.0,>=2.1->botocore<1.4.0,>=1.3.0->boto3==1.2.2)
  Using cached six-1.10.0-py2.py3-none-any.whl
Building wheels for collected packages: docutils
  Running setup.py bdist_wheel for docutils ... done
  Stored in directory: /root/.cache/pip/wheels/db/de/bd/b99b1e12d321fbc950766c58894c6576b1a73ae3131b29a151
Successfully built docutils
Installing collected packages: futures, six, python-dateutil, jmespath, docutils, botocore, boto3
Successfully installed boto3 botocore docutils futures jmespath python-dateutil six-1.10.0
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six-1.10.0.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six.py already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six.pyc already exists. Specify --upgrade to force replacement.
Collecting boto==2.38.0
  Downloading boto-2.38.0-py2.py3-none-any.whl (1.3MB)
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Installing collected packages: boto
Successfully installed boto
Collecting celery==3.1.23
  Downloading celery-3.1.23-py2.py3-none-any.whl (520kB)
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Collecting pytz>dev (from celery==3.1.23)
  Using cached pytz-2016.6.1-py2.py3-none-any.whl
Collecting billiard<3.4,>=3.3.0.23 (from celery==3.1.23)
  Downloading billiard-3.3.0.23.tar.gz (151kB)
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Collecting kombu<3.1,>=3.0.34 (from celery==3.1.23)
  Downloading kombu-3.0.35-py2.py3-none-any.whl (240kB)
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Collecting amqp<2.0,>=1.4.9 (from kombu<3.1,>=3.0.34->celery==3.1.23)
  Downloading amqp-1.4.9-py2.py3-none-any.whl (51kB)
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Collecting anyjson>=0.3.3 (from kombu<3.1,>=3.0.34->celery==3.1.23)
  Downloading anyjson-0.3.3.tar.gz
Building wheels for collected packages: billiard, anyjson
  Running setup.py bdist_wheel for billiard ... done
  Stored in directory: /root/.cache/pip/wheels/11/68/13/9f46e6b8760998754ce90ef87103ea7f4e80504ffc9f93a362
  Running setup.py bdist_wheel for anyjson ... done
  Stored in directory: /root/.cache/pip/wheels/06/3d/74/f64c3ce3266df2598031818ecc86bc25c8ccede0723973f119
Successfully built billiard anyjson
Installing collected packages: pytz, billiard, amqp, anyjson, kombu, celery
Successfully installed amqp anyjson billiard celery kombu pytz-2016.6.1
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/pytz-2016.6.1.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/pytz already exists. Specify --upgrade to force replacement.
Collecting click==6.2
  Downloading click-6.2-py2.py3-none-any.whl (70kB)
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Installing collected packages: click
Successfully installed click-6.6
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/click already exists. Specify --upgrade to force replacement.
Collecting greenlet==0.4.7
  Downloading greenlet-0.4.7.zip (77kB)
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Building wheels for collected packages: greenlet
  Running setup.py bdist_wheel for greenlet ... done
  Stored in directory: /root/.cache/pip/wheels/6e/90/d6/992387216e25aa979e9839077a5903280aa55ca01aac12422d
Successfully built greenlet
Installing collected packages: greenlet
Successfully installed greenlet
Collecting itsdangerous==0.24
Installing collected packages: itsdangerous
Successfully installed itsdangerous-0.24
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/itsdangerous.pyc already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/itsdangerous.py already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/itsdangerous-0.24.dist-info already exists. Specify --upgrade to force replacement.
Collecting mailjet_rest==1.0.3
  Downloading mailjet_rest-v1.0.3.tar.gz
Collecting requests>=2.4.3 (from mailjet_rest==1.0.3)
  Downloading requests-2.10.0-py2.py3-none-any.whl (506kB)
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Building wheels for collected packages: mailjet-rest
  Running setup.py bdist_wheel for mailjet-rest ... done
  Stored in directory: /root/.cache/pip/wheels/1b/c0/15/bda4df83a40d6d8531ecb40bf9798e9d7bb86c324f2822ce1f
Successfully built mailjet-rest
Installing collected packages: requests, mailjet-rest
Successfully installed mailjet-rest requests
Collecting newrelic==2.56.0.42
  Downloading newrelic-2.56.0.42.tar.gz (670kB)
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Building wheels for collected packages: newrelic
  Running setup.py bdist_wheel for newrelic ... done
  Stored in directory: /root/.cache/pip/wheels/9d/1f/8c/e3a183033010674b1d65bf5ceea9c531a306da3ecb2f9aed20
Successfully built newrelic
Installing collected packages: newrelic
Successfully installed newrelic
Collecting numexpr==2.6.1
  Downloading numexpr-2.6.1-cp27-cp27m-manylinux1_x86_64.whl (361kB)
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Collecting numpy>=1.6 (from numexpr==2.6.1)
  Downloading numpy-1.11.1-cp27-cp27m-manylinux1_x86_64.whl (15.3MB)
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Installing collected packages: numpy, numexpr
Successfully installed numexpr numpy
Collecting numpy==1.9.1
  Downloading numpy-1.9.1-cp27-cp27m-manylinux1_x86_64.whl (14.7MB)
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Installing collected packages: numpy
Successfully installed numpy-1.11.1
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/numpy already exists. Specify --upgrade to force replacement.
Collecting pandas==0.16.2
  Downloading pandas-0.16.2.tar.gz (4.9MB)
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Collecting python-dateutil (from pandas==0.16.2)
  Using cached python_dateutil-2.5.3-py2.py3-none-any.whl
Collecting pytz>=2011k (from pandas==0.16.2)
  Using cached pytz-2016.6.1-py2.py3-none-any.whl
Collecting numpy>=1.7.0 (from pandas==0.16.2)
  Using cached numpy-1.11.1-cp27-cp27m-manylinux1_x86_64.whl
Collecting six>=1.5 (from python-dateutil->pandas==0.16.2)
  Using cached six-1.10.0-py2.py3-none-any.whl
Building wheels for collected packages: pandas
  Running setup.py bdist_wheel for pandas ... done
  Stored in directory: /root/.cache/pip/wheels/71/df/59/088863e36c08262a60bd43b5f9500f5f5588c1e6f7f2e0e27a
Successfully built pandas
Installing collected packages: six, python-dateutil, pytz, numpy, pandas
Successfully installed numpy-1.9.1 pandas python-dateutil-2.5.3 pytz-2016.6.1 six-1.10.0
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/python_dateutil-2.5.3.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/pytz-2016.6.1.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/pytz already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six-1.10.0.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six.py already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/numpy-1.11.1.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/dateutil already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/numpy already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six.pyc already exists. Specify --upgrade to force replacement.
Collecting pdfkit==0.5.0
  Downloading pdfkit-0.5.0-py2-none-any.whl
Installing collected packages: pdfkit
Successfully installed pdfkit
Collecting perfmetrics==2.0
  Downloading perfmetrics-2.0.tar.gz
Collecting setuptools (from perfmetrics==2.0)
  Using cached setuptools-25.1.1-py2.py3-none-any.whl
Building wheels for collected packages: perfmetrics
  Running setup.py bdist_wheel for perfmetrics ... done
  Stored in directory: /root/.cache/pip/wheels/62/b0/76/f53e350a748b2d5325abead416067eff42a9688fc56442442b
Successfully built perfmetrics
Installing collected packages: setuptools, perfmetrics
Successfully installed perfmetrics setuptools-25.1.1
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/setuptools already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/setuptools-25.1.1.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/easy_install.py already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/pkg_resources already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/easy_install.pyc already exists. Specify --upgrade to force replacement.
Collecting prettytable==0.7.2
  Downloading prettytable-0.7.2.zip
Building wheels for collected packages: prettytable
  Running setup.py bdist_wheel for prettytable ... done
  Stored in directory: /root/.cache/pip/wheels/b6/90/7b/1c22b89217d0eba6d5f406e562365ebee804f0d4595b2bdbcd
Successfully built prettytable
Installing collected packages: prettytable
Successfully installed prettytable
Collecting psycopg2==2.5.4
  Downloading psycopg2-2.5.4.tar.gz (682kB)
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Building wheels for collected packages: psycopg2
  Running setup.py bdist_wheel for psycopg2 ... done
  Stored in directory: /root/.cache/pip/wheels/3a/8c/ad/8ef6a7ceb3eb6f049516d631454cff6013a2836a55fb5e7df6
Successfully built psycopg2
Installing collected packages: psycopg2
Successfully installed psycopg2
Collecting python-dateutil==2.4.0
  Downloading python_dateutil-2.4.0-py2.py3-none-any.whl (175kB)
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Collecting six>=1.5 (from python-dateutil==2.4.0)
  Using cached six-1.10.0-py2.py3-none-any.whl
Installing collected packages: six, python-dateutil
Successfully installed python-dateutil-2.5.3 six-1.10.0
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six-1.10.0.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six.py already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/dateutil already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six.pyc already exists. Specify --upgrade to force replacement.
Collecting pytz==2014.10
  Downloading pytz-2014.10-py2.py3-none-any.whl (477kB)
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Installing collected packages: pytz
Successfully installed pytz-2016.6.1
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/pytz already exists. Specify --upgrade to force replacement.
Collecting requests[security]==2.7.0
  Downloading requests-2.7.0-py2.py3-none-any.whl (470kB)
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Collecting pyOpenSSL; extra == "security" (from requests[security]==2.7.0)
  Downloading pyOpenSSL-16.0.0-py2.py3-none-any.whl (45kB)
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Collecting ndg-httpsclient; extra == "security" (from requests[security]==2.7.0)
  Downloading ndg_httpsclient-0.4.2.tar.gz
Collecting pyasn1; extra == "security" (from requests[security]==2.7.0)
  Downloading pyasn1-0.1.9-py2.py3-none-any.whl
Collecting cryptography>=1.3 (from pyOpenSSL; extra == "security"->requests[security]==2.7.0)
  Downloading cryptography-1.4.tar.gz (399kB)
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Collecting six>=1.5.2 (from pyOpenSSL; extra == "security"->requests[security]==2.7.0)
  Using cached six-1.10.0-py2.py3-none-any.whl
Collecting idna>=2.0 (from cryptography>=1.3->pyOpenSSL; extra == "security"->requests[security]==2.7.0)
  Downloading idna-2.1-py2.py3-none-any.whl (54kB)
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Collecting setuptools>=11.3 (from cryptography>=1.3->pyOpenSSL; extra == "security"->requests[security]==2.7.0)
  Using cached setuptools-25.1.1-py2.py3-none-any.whl
Collecting enum34 (from cryptography>=1.3->pyOpenSSL; extra == "security"->requests[security]==2.7.0)
  Downloading enum34-1.1.6-py2-none-any.whl
Collecting ipaddress (from cryptography>=1.3->pyOpenSSL; extra == "security"->requests[security]==2.7.0)
  Downloading ipaddress-1.0.16-py27-none-any.whl
Collecting cffi>=1.4.1 (from cryptography>=1.3->pyOpenSSL; extra == "security"->requests[security]==2.7.0)
  Using cached cffi-1.7.0-cp27-cp27m-manylinux1_x86_64.whl
Collecting pycparser (from cffi>=1.4.1->cryptography>=1.3->pyOpenSSL; extra == "security"->requests[security]==2.7.0)
Building wheels for collected packages: ndg-httpsclient, cryptography
  Running setup.py bdist_wheel for ndg-httpsclient ... done
  Stored in directory: /root/.cache/pip/wheels/44/6b/b1/eef816d523c0aa93f350fd2a78d74769e010e2f26623921b76
  Running setup.py bdist_wheel for cryptography ... done
  Stored in directory: /root/.cache/pip/wheels/f6/6c/21/11ec069285a52d7fa8c735be5fc2edfb8b24012c0f78f93d20
Successfully built ndg-httpsclient cryptography
Installing collected packages: idna, pyasn1, six, setuptools, enum34, ipaddress, pycparser, cffi, cryptography, pyOpenSSL, ndg-httpsclient, requests
Successfully installed cffi-1.7.0 cryptography enum34 idna ipaddress ndg-httpsclient pyOpenSSL pyasn1 pycparser-2.14 requests-2.10.0 setuptools-25.1.1 six-1.10.0
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/setuptools already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/setuptools-25.1.1.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/cffi already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six-1.10.0.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six.py already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/easy_install.py already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/.libs_cffi_backend already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/pycparser already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/cffi-1.7.0.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/pkg_resources already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/easy_install.pyc already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/pycparser-2.14.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six.pyc already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/requests already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/_cffi_backend.so already exists. Specify --upgrade to force replacement.
Collecting redis==2.10.5
  Downloading redis-2.10.5-py2.py3-none-any.whl (60kB)
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Installing collected packages: redis
Successfully installed redis
Collecting scikit-learn==0.15.2
  Downloading scikit-learn-0.15.2.tar.gz (7.0MB)
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Building wheels for collected packages: scikit-learn
  Running setup.py bdist_wheel for scikit-learn ... done
  Stored in directory: /root/.cache/pip/wheels/53/0d/00/9d84729316d993d655a06790a9c890cb3692d979da01aec1e0
Successfully built scikit-learn
Installing collected packages: scikit-learn
Successfully installed scikit-learn
Collecting scipy==0.15.0
  Downloading scipy-0.15.0-cp27-cp27m-manylinux1_x86_64.whl (36.9MB)
    100% |################################| 36.9MB 20kB/s
Installing collected packages: scipy
Successfully installed scipy
Collecting setuptools==17.1
  Downloading setuptools-17.1-py2.py3-none-any.whl (461kB)
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Installing collected packages: setuptools
Successfully installed setuptools-25.1.1
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/setuptools already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/easy_install.py already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/pkg_resources already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/easy_install.pyc already exists. Specify --upgrade to force replacement.
Collecting six==1.9.0
  Downloading six-1.9.0-py2.py3-none-any.whl
Installing collected packages: six
Successfully installed six-1.10.0
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six.py already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six.pyc already exists. Specify --upgrade to force replacement.
Collecting structlog==16.0.0
  Downloading structlog-16.0.0-py2.py3-none-any.whl
Collecting six (from structlog==16.0.0)
  Using cached six-1.10.0-py2.py3-none-any.whl
Installing collected packages: six, structlog
Successfully installed six-1.10.0 structlog
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six-1.10.0.dist-info already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six.py already exists. Specify --upgrade to force replacement.
Target directory /hab/pkgs/bixu/api/0.1.0/20160730134450/lib/python2.7/site-packages/six.pyc already exists. Specify --upgrade to force replacement.
Collecting tables==3.1.1
  Downloading tables-3.1.1.tar.gz (6.7MB)
    100% |################################| 6.7MB 128kB/s
    Complete output from command python setup.py egg_info:
    * Using Python 2.7.12 (default, Jul 29 2016, 20:00:39)
    .. ERROR:: You need numpy 1.4.1 or greater to run PyTables!

    ----------------------------------------
Command "python setup.py egg_info" failed with error code 1 in /tmp/pip-build-GV0qLw/tables/

@tomkooij
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Thanks! I'll look info this next week when im back from holidays.

@avalentino
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@bixu even if you have specified numpy==1.9.1 in your requirements list, it seems that numpy v1.11.1 has been installed.
This trigger an old bug #366 that has been fixed in PyTables 3.2 (see also [1]).

[1] http://www.pytables.org/release-notes/RELEASE_NOTES_v3.2.x.html#id5

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