@QIICR

Quantitative Image Informatics for Cancer Research

QIICR is supported by the NIH National Cancer Institute ITCR program, award U24 CA180918.

Pinned repositories

  1. dcmqi

    dcmqi (DICOM for Quantitative Imaging) is a free, open source library that implements conversion between commonly used imaging research formats and the standard DICOM representation: https://qiicr.…

    C++ 53 18

  2. QuantitativeReporting

    Segmentation-based measurements with DICOM import and export of the results.

    Python 8 17

  3. TCIABrowser

    3D Slicer module for browsing and downloading medical imaging collections from The Cancer Imaging Archive (TCIA).

    Python 4 4

  4. PETTumorSegmentation

    3D Slicer Extension for PETTumorSegmentation

    C++ 6 5

  5. atom-dicom-dump

    Atom editor package for examining the content of DICOM files

    CoffeeScript 1 1

  6. Iowa2DICOM

    Scripts used for conversion of the data for the PET/CT quantitative imaging biomarker development project by the Iowa site of NCI QIN.

    C++ 1 3

  • dcmqi (DICOM for Quantitative Imaging) is a free, open source library that implements conversion between commonly used imaging research formats and the standard DICOM representation: https://qiicr.gitbooks.io/dcmqi-guide

    C++ 53 18 BSD-3-Clause 1 issue needs help Updated Aug 14, 2018
  • Segmentation-based measurements with DICOM import and export of the results.

    Python 8 17 Updated Aug 13, 2018
  • Web site for the DICOM4MICCAI tutorial at MICCAI 2017

    HTML 2 MIT Updated Aug 8, 2018
  • Web site for QIICR at http://qiicr.org

    JavaScript 3 MIT Updated Jul 30, 2018
  • 3D Slicer Extension for Analysis of Uniform Cylinder Phantom PET scans

    C++ Updated Jul 23, 2018
  • Web site for the Academic Technology Development in Cancer Research workshop at CI4CC Spring 2016 Symposium

    HTML Updated Jul 12, 2018
  • This is a customized version of ITK to support dcmqi CI. It was manually and ugly stripped down to reduce build time and make continuous integration feasible.

    C++ Apache-2.0 Updated Jun 20, 2018
  • This is a version of DCMTK that is customized for dcmqi CI (see dcmqi branch)

    C++ 2 Updated Jun 20, 2018
  • Analysis of Dynamic Susceptibility Contrast (DSC) MRI

    C++ 1 1 Updated Jun 4, 2018
  • Learning materials for https://github.com/qiicr/dcmqi

    JavaScript 1 1 Updated Jun 1, 2018
  • API for 3D Slicer extension development providing widgets, mixins, helpers, decorators etc.

    Python 4 2 Updated May 31, 2018
  • Read, modify and write DICOM files with python code

    Python 210 Updated Apr 24, 2018
  • Python Updated Apr 20, 2018
  • 3D Slicer extension containing tools for importing DICOM PET series

    C++ 5 6 Updated Apr 11, 2018
  • 3D Slicer Extension for PETTumorSegmentation

    C++ 6 5 Updated Apr 11, 2018
  • Python Updated Apr 11, 2018
  • Python 1 2 Updated Apr 4, 2018
  • Slicer Extension providing pharmacokinetic modeling

    C++ 16 Updated Apr 3, 2018
  • UIowa QIN PET volume indices measurement tool for 3D Slicer

    Python 1 Updated Mar 28, 2018
  • Python 1 3 Updated Mar 5, 2018
  • DICOM4QI is an open connectathon with the purpose of evaluating interoperability of the image analysis tools and workstations, applied to exchange of the quantitative image analysis results using DICOM standard: https://qiicr.gitbooks.io/dicom4qi

    2 7 Updated Feb 23, 2018
  • 3D Slicer module for browsing and downloading medical imaging collections from The Cancer Imaging Archive (TCIA).

    Python 4 4 Updated Jan 29, 2018
  • Longitudinal PET/CT Analysis Module for Slicer 4

    C++ 1 7 Updated Jan 19, 2018
  • Supporting materials for the MICCAI 2017 DICOM tutorial

    Jupyter Notebook 3 BSD-3-Clause Updated Sep 18, 2017
  • CSS Updated Sep 13, 2017
  • T1 mapping estimates effective tissue parameter maps (T1) from multi-spectral FLASH MRI scans with different flip angles.

    C++ 1 Updated Aug 7, 2017
  • Atom editor package for examining the content of DICOM files

    CoffeeScript 1 1 MIT 1 issue needs help Updated Aug 4, 2017
  • Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.

    10 MIT Updated Jun 27, 2017
  • Repository to keep Dockerfiles for automated Docker builds of DCMTK

    Shell Updated May 16, 2017
  • dcmiodlang is the implementation of a custom DICOM information object definition language (IODL) and a compatible transformation language, the information object definition [transformation] skeleton language (IODSKEL).

    C++ Updated Apr 21, 2017