/Iowa2DICOM

Scripts used for conversion of the data for the PET/CT quantitative imaging biomarker development project by the Iowa site of NCI QIN.
nci-qin
  1. C++ 62.6%
  2. Shell 22.1%
  3. Python 8.3%
  4. CMake 7.0%
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@fedorov
fedorov Update manuscript reference
Latest commit b3e1477 Jun 28, 2016
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CMake ENH: include repository info and revision hash May 26, 2014
Common ENH: added routines for RGB-CIELab conversion May 22, 2015
ConvertSegmentations ENH: added handling of fractional segmentations Jun 4, 2015
Doc ENH: add description of the use case for completeness Jul 31, 2014
Resources change SD to stddev Aug 18, 2015
Scripts DOC: include script for genterating all objects Oct 26, 2015
SingleTimepoint BUG: fix code meaning Jan 13, 2016
Testing ENH: test directory structure for the reference Feb 23, 2015
Util Initial commit May 26, 2014
.gitignore ENH: include repository info and revision hash May 26, 2014
CMakeLists.txt ENH: updating the functionality to meet Iowa needs Mar 3, 2015
README Update manuscript reference Jun 28, 2016
TODO Add TODO list Jul 31, 2014

README 

NOTE: these scripts were used for conversion of the Iowa QIN-HEADNECK derived data. 
They are not maintained, and instead the general purpose functionality is being 
migrated into the Reporting repository https://github.com/fedorov/Reporting
and into the 3D Slicer core.

The process of data conversion is described in the following manuscript:

Fedorov A, Clunie D, Ulrich E, Bauer C, Wahle A, Brown B, Onken M, Riesmeier J, 
Pieper S, Kikinis R, Buatti J, Beichel RR. (2016) DICOM for quantitative imaging 
biomarker development: a standards based approach to sharing clinical data and 
structured PET/CT analysis results in head and neck cancer research. PeerJ 4:e2057 
https://doi.org/10.7717/peerj.2057

The resulting data is available in TCIA QIN-HEADNECK collection:

https://wiki.cancerimagingarchive.net/display/Public/QIN-HeadNeck