/
SegmentationCategoryTypeModifier-SlicerGeneralAnatomy.json
4758 lines (4758 loc) · 158 KB
/
SegmentationCategoryTypeModifier-SlicerGeneralAnatomy.json
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{
"SegmentationCategoryTypeContextName": "Segmentation category and type - 3D Slicer General Anatomy list",
"@schema": "https://raw.githubusercontent.com/qiicr/dcmqi/master/doc/segment-context-schema.json#",
"SegmentationCodes": {
"Category": [
{
"CodeMeaning": "Tissue",
"CodingSchemeDesignator": "SCT",
"SNOMEDCTConceptID": "85756007",
"cid": "7051",
"UMLSConceptUID": "C0040300",
"CodeValue": "85756007",
"contextGroupName": "Segmentation Property Categories",
"Type": [
{
"recommendedDisplayRGBValue": [
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174,
128
],
"CodeMeaning": "Tissue",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "tissue",
"cid": "7165",
"UMLSConceptUID": "C0040300",
"CodeValue": "85756007",
"contextGroupName": "Abstract Segmentation Types",
"SNOMEDCTConceptID": "85756007",
"3dSlicerIntegerLabel": 1
},
{
"recommendedDisplayRGBValue": [
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],
"CodeMeaning": "Artery",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "artery",
"cid": "7166",
"UMLSConceptUID": "C0555806",
"CodeValue": "51114001",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "275989006",
"3dSlicerIntegerLabel": 17
},
{
"recommendedDisplayRGBValue": [
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],
"CodeMeaning": "Body fat",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "fat",
"cid": "7166",
"UMLSConceptUID": "C0344335",
"CodeValue": "248300009",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "248300009",
"3dSlicerIntegerLabel": 12
},
{
"recommendedDisplayRGBValue": [
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],
"CodeMeaning": "Bone",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "bone",
"cid": "7166",
"UMLSConceptUID": "C0262950",
"CodeValue": "272673000",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "272673000",
"3dSlicerIntegerLabel": 2
},
{
"recommendedDisplayRGBValue": [
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],
"CodeMeaning": "Capillary",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "capillary",
"cid": "7166",
"UMLSConceptUID": "C0006901",
"CodeValue": "20982000",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "20982000",
"3dSlicerIntegerLabel": 18
},
{
"recommendedDisplayRGBValue": [
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],
"CodeMeaning": "Cartilage",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "cartilage",
"cid": "7166",
"UMLSConceptUID": "C0007301",
"CodeValue": "309312004",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "309312004",
"3dSlicerIntegerLabel": 21
},
{
"recommendedDisplayRGBValue": [
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],
"CodeMeaning": "Connective tissue",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "connective tissue",
"cid": "7166",
"UMLSConceptUID": "C0009780",
"CodeValue": "21793004",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "21793004",
"3dSlicerIntegerLabel": 4
},
{
"recommendedDisplayRGBValue": [
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],
"CodeMeaning": "Ligament",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "ligament",
"cid": "7166",
"UMLSConceptUID": "C0023685",
"CodeValue": "52082005",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "52082005",
"3dSlicerIntegerLabel": 19
},
{
"recommendedDisplayRGBValue": [
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],
"CodeMeaning": "Lymph node",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "lymph node",
"cid": "7166",
"UMLSConceptUID": "C0024204",
"CodeValue": "59441001",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "59441001",
"3dSlicerIntegerLabel": 23
},
{
"recommendedDisplayRGBValue": [
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],
"CodeMeaning": "Lymphatic vessel",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "lymphatic vessel",
"cid": "7166",
"UMLSConceptUID": "C0229889",
"CodeValue": "83555006",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "83555006",
"3dSlicerIntegerLabel": 24
},
{
"recommendedDisplayRGBValue": [
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],
"CodeMeaning": "Meniscus",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "meniscus",
"cid": "7166",
"UMLSConceptUID": "C0224498",
"CodeValue": "74135004",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "74135004",
"3dSlicerIntegerLabel": 22
},
{
"recommendedDisplayRGBValue": [
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104,
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],
"CodeMeaning": "Muscle",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "muscle",
"cid": "7166",
"UMLSConceptUID": "C0026845",
"CodeValue": "71616004",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "71616004",
"3dSlicerIntegerLabel": 8
},
{
"recommendedDisplayRGBValue": [
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214,
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],
"CodeMeaning": "Nerve",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "nerve",
"cid": "7166",
"UMLSConceptUID": "C1268169",
"CodeValue": "119410002",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "119410002",
"3dSlicerIntegerLabel": 15
},
{
"recommendedDisplayRGBValue": [
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130,
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],
"CodeMeaning": "Organ",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "organ",
"cid": "7166",
"UMLSConceptUID": "C1285092",
"CodeValue": "113343008",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "2861001",
"3dSlicerIntegerLabel": 6
},
{
"recommendedDisplayRGBValue": [
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122,
101
],
"CodeMeaning": "Skin",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "skin",
"cid": "7166",
"UMLSConceptUID": "C1123023",
"CodeValue": "39937001",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "39937001",
"3dSlicerIntegerLabel": 3
},
{
"recommendedDisplayRGBValue": [
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],
"CodeMeaning": "Tendon",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "tendon",
"cid": "7166",
"UMLSConceptUID": "C0039508",
"CodeValue": "13024002",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "13024002",
"3dSlicerIntegerLabel": 20
},
{
"recommendedDisplayRGBValue": [
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128
],
"CodeMeaning": "Tissue",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "tissue",
"cid": "7166",
"UMLSConceptUID": "C0040300",
"CodeValue": "85756007",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "85756007",
"3dSlicerIntegerLabel": 1
},
{
"recommendedDisplayRGBValue": [
0,
151,
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],
"CodeMeaning": "Vein",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "vein",
"cid": "7166",
"UMLSConceptUID": "C0447146",
"CodeValue": "29092000",
"contextGroupName": "Common Tissue Segmentation Types",
"SNOMEDCTConceptID": "181378009",
"3dSlicerIntegerLabel": 16
}
],
"showAnatomy": true
},
{
"CodeMeaning": "Anatomical Structure",
"CodingSchemeDesignator": "SCT",
"SNOMEDCTConceptID": "123037004",
"cid": "7051",
"UMLSConceptUID": "C1268086",
"CodeValue": "123037004",
"contextGroupName": "Segmentation Property Categories",
"Type": [
{
"recommendedDisplayRGBValue": [
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122,
101
],
"cid": "7154",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "abdomen",
"CodeValue": "113345001",
"UMLSConceptUID": "C0000726",
"CodeMeaning": "Abdomen",
"contextGroupName": "Abdominal Organ Segmentation Types",
"SNOMEDCTConceptID": "113345001",
"3dSlicerIntegerLabel": 206
},
{
"recommendedDisplayRGBValue": [
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124,
161
],
"cid": "7154",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "abdominal cavity",
"CodeValue": "52731004",
"UMLSConceptUID": "C0230168",
"CodeMeaning": "Abdominal cavity",
"contextGroupName": "Abdominal Organ Segmentation Types",
"SNOMEDCTConceptID": "52731004",
"3dSlicerIntegerLabel": 205
},
{
"recommendedDisplayRGBValue": [
171,
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],
"cid": "7154",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "muscles of abdominal wall",
"CodeValue": "195879000",
"UMLSConceptUID": "C1279385",
"CodeMeaning": "Abdominal wall muscle",
"contextGroupName": "Abdominal Organ Segmentation Types",
"SNOMEDCTConceptID": "195879000",
"3dSlicerIntegerLabel": 244
},
{
"recommendedDisplayRGBValue": [
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],
"cid": "7153",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "adenohypophysis",
"CodeValue": "62818001",
"UMLSConceptUID": "C0032008",
"CodeMeaning": "Adenohypophysis",
"contextGroupName": "CNS Tissue Segmentation Types",
"SNOMEDCTConceptID": "62818001",
"3dSlicerIntegerLabel": 120
},
{
"contextGroupName": "Abdominal Organ Segmentation Types",
"cid": "7154",
"CodeMeaning": "Adrenal gland",
"CodingSchemeDesignator": "SCT",
"UMLSConceptUID": "C0001625",
"CodeValue": "23451007",
"Modifier": [
{
"recommendedDisplayRGBValue": [
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],
"cid": "244",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "right adrenal gland",
"CodeValue": "24028007",
"UMLSConceptUID": "C0205090",
"CodeMeaning": "Right",
"contextGroupName": "Laterality",
"SNOMEDCTConceptID": "24028007",
"3dSlicerIntegerLabel": 228
},
{
"recommendedDisplayRGBValue": [
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],
"cid": "244",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "left adrenal gland",
"CodeValue": "7771000",
"UMLSConceptUID": "C0205091",
"CodeMeaning": "Left",
"contextGroupName": "Laterality",
"SNOMEDCTConceptID": "7771000",
"3dSlicerIntegerLabel": 229
}
],
"SNOMEDCTConceptID": "23451007",
"3dSlicerIntegerLabel": 120
},
{
"contextGroupName": "CNS Tissue Segmentation Types",
"cid": "7153",
"CodeMeaning": "Amygdala",
"CodingSchemeDesignator": "SCT",
"UMLSConceptUID": "C0002708",
"CodeValue": "4958002",
"Modifier": [
{
"recommendedDisplayRGBValue": [
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],
"cid": "244",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "right amygdaloid complex",
"CodeValue": "24028007",
"UMLSConceptUID": "C0205090",
"CodeMeaning": "Right",
"contextGroupName": "Laterality",
"SNOMEDCTConceptID": "24028007",
"3dSlicerIntegerLabel": 62
},
{
"recommendedDisplayRGBValue": [
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],
"cid": "244",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "left amygdaloid complex",
"CodeValue": "7771000",
"UMLSConceptUID": "C0205091",
"CodeMeaning": "Left",
"contextGroupName": "Laterality",
"SNOMEDCTConceptID": "7771000",
"3dSlicerIntegerLabel": 63
}
],
"SNOMEDCTConceptID": "4958002",
"3dSlicerIntegerLabel": 229
},
{
"recommendedDisplayRGBValue": [
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],
"cid": "4031",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "anus",
"CodeValue": "53505006",
"UMLSConceptUID": "C0003461",
"CodeMeaning": "Anus",
"contextGroupName": "Common Anatomic Regions",
"SNOMEDCTConceptID": "53505006",
"3dSlicerIntegerLabel": 215
},
{
"recommendedDisplayRGBValue": [
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],
"cid": "7152",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "aorta",
"CodeValue": "15825003",
"UMLSConceptUID": "C0003483",
"CodeMeaning": "Aorta",
"contextGroupName": "Cardiac Structure Segmentation Types",
"SNOMEDCTConceptID": "15825003",
"3dSlicerIntegerLabel": 191
},
{
"recommendedDisplayRGBValue": [
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],
"cid": "6113",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "aortic valve",
"CodeValue": "34202007",
"UMLSConceptUID": "C0003501",
"CodeMeaning": "Aortic Valve",
"contextGroupName": "Mediastinum Anatomy Finding or Feature",
"SNOMEDCTConceptID": "34202007",
"3dSlicerIntegerLabel": 189
},
{
"recommendedDisplayRGBValue": [
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],
"cid": "7153",
"CodingSchemeDesignator": "SCT",
"3dSlicerLabel": "arachnoid",
"CodeValue": "75042008",
"UMLSConceptUID": "C0003707",
"CodeMeaning": "Arachnoid",
"contextGroupName": "CNS Tissue Segmentation Types",
"SNOMEDCTConceptID": "75042008",
"3dSlicerIntegerLabel": 124
},
{
"contextGroupName": "CNS Tissue Segmentation Types",
"cid": "7153",
"CodeMeaning": "Arcuate Fasciculus",
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