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Jupyter notebooks and other tutorials for medical imaging and deep learning, courtesy of the QTIM lab.
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README.md

QTIM Tutorials

Jupyter notebooks and other tutorials for medical imaging and deep learning, courtesy of the QTIM lab.

Prerequisites

  • Git - to download this repository
  • Python 3 distribution. We recommend Anaconda: https://www.anaconda.com/download/
  • Spyder 3 (Python IDE) - this comes with Anaconda, useful for larger projects
  • Jupyter - also comes with Anaconda

Dependencies

  • scikit-image - pip install scikit-image
  • scikit-learn - pip install scikit-learn
  • TensorFlow 1.5+ - pip install tensorflow
  • Keras 2+ - pip install keras

If you have an NVIDIA GPU and would like to use it, then you'll need to also install:

  • Up-to-date NVIDIA drivers
  • NVIDIA CUDA toolkit
  • CuDNN
  • tensorflow-gpu
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