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A deep learning python package for neuroimaging data.
Code base for preprocessing, segmentation and classification of retinal images
A repository for the public-facing web page of the Quantiative Tumor Imaging Lab at the Martinos Center.
RSNA Measurement Crowd Sourcing project
A set of tools used for quantitative analysis of and machine learning from 3D medical images. Created by the Quantitative Tumor Imaging Lab at Martinos.
A deep learning python package for medical imaging data.
Jupyter notebooks and other tutorials for medical imaging and deep learning, courtesy of the QTIM lab.
Hierarchical Evolutionary Architecture Learning
A repository for downloading parametric mapping phantoms derived from real path data. Comes with utilities to add noise.
Retina blood vessel segmentation with a convolutional neural network
Slicer extension for TOMAAT
A web-based telemedicine platform for retinopathy of prematurity
Experimental glue plugin for medical data
A step-by-step wizard for analyzing GBM cases in 3D Slicer.
Submission for BRATS 2017
Automated localization and anomaly detection in knee osteroarthritis
A pipeline for participating in segmentation challenges. Actively developed, performance not yet guaranteed.
This is a self-contained Docker container for segmenting high- and low-grade glioblastomas in MR scans using deep learning.
A DeepInfer model for glioblastoma.
Use of Deep Learning to Predict IDH status from MR Imaging
This is a 3D model-based segmentation tool for 3D Slicer. It includes utilities for calculating subtraction maps and thresholding intensities. It can be downloaded as an extension to 3D Slicer.
Slicer extensions index