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@Quetzal-framework

Quetzal-framework

Welcome to the Quetzal framework

This organization aims at gathering code that is of general use for Statistical Phylogeography. In the present state, in mainly focuses on simulating neutral genetic diversity in complex landscapes for inference purposes.

The general structure of this framework is the following, in order of increasing granularity:

  • Quetzal-CoaTL : a library of C++ generic components for building simulators of molecular diversity. It is the most technical, but also the most general project on this list. Meaning, if you are interested by simulating genetic diversity, that may be a useful repository to check out.
  • Quetzal-EGGS : this repository aims at gathering ready-to-use simulators for a variety of users. These simulators do not aim at solving the life equation, nor do they pretend to match existent closed-source softwares in their complexity and generality. Rather, the project aims at encouraging the community to master modern C++ tools to implement problem-specific, yet tested, open-source and peer-reviewable implementations that precisely match their needs. Anyone is welcome to add or ask for new simulators.
  • Quetzal-CRUMBS : this Python package aims at solving common tasks and problems that tend to appear when using spatially explicit simulators, like preparing a landscape for a simulation.
  • Quetzal-NEST : This repository contains a Dockerfile that provides a reproducible environment for this kind of analysis. You may find the related Docker image (hosted on Dockerhub) to be useful when needing to configure an environment to run simulations on distributed clusters where you don't have admin privileges.
  • Quetzal_on_OSG : this repository is an application example that uses Open Science Grid to run a full analysis.

Popular repositories Loading

  1. quetzal-CoaTL quetzal-CoaTL Public

    A toolbox for C++ devs wanting to build geospatial population genetics simulators !

    C++ 11 1

  2. quetzal-EGGS quetzal-EGGS Public

    Simulators of spatial genetic diversity: for non-programmers and researchers!

    C++ 6

  3. quetzal-CRUMBS quetzal-CRUMBS Public

    Python library for iDDC modeling using Quetzal

    Python 5

  4. quetzal-NEST quetzal-NEST Public

    Dockerfile for containers using the Quetzal framework

    Dockerfile

  5. quetzal_on_OSG quetzal_on_OSG Public

    iDDC modeling and inference using the Quetzal framework on Open Science Grid for distributed High Throughput Computing

    R 1

  6. Quetzal-framework.github.io Quetzal-framework.github.io Public

    Framework for population genetic simulations

    CMake

Repositories

Showing 10 of 10 repositories
  • quetzal-CoaTL Public

    A toolbox for C++ devs wanting to build geospatial population genetics simulators !

    Quetzal-framework/quetzal-CoaTL’s past year of commit activity
    C++ 11 GPL-3.0 1 0 0 Updated Sep 25, 2024
  • .github Public
    Quetzal-framework/.github’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Oct 14, 2023
  • quetzal-coatl-conan Public

    This repository contains the Conan package recipe files

    Quetzal-framework/quetzal-coatl-conan’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jun 24, 2023
  • conan-config Public

    Config files control Conan's behavior, including remote repositories, build profiles, default options, and more.

    Quetzal-framework/conan-config’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Jun 24, 2023
  • starter-template Public

    A template project to get you started with C++ and tooling

    Quetzal-framework/starter-template’s past year of commit activity
    CMake 0 0 0 0 Updated Jun 22, 2023
  • Quetzal-framework.github.io Public

    Framework for population genetic simulations

    Quetzal-framework/Quetzal-framework.github.io’s past year of commit activity
    CMake 0 GPL-3.0 0 0 0 Updated Jul 28, 2022
  • quetzal-CRUMBS Public

    Python library for iDDC modeling using Quetzal

    Quetzal-framework/quetzal-CRUMBS’s past year of commit activity
    Python 5 GPL-3.0 0 3 0 Updated Jul 7, 2022
  • quetzal-NEST Public

    Dockerfile for containers using the Quetzal framework

    Quetzal-framework/quetzal-NEST’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Jun 5, 2022
  • quetzal_on_OSG Public

    iDDC modeling and inference using the Quetzal framework on Open Science Grid for distributed High Throughput Computing

    Quetzal-framework/quetzal_on_OSG’s past year of commit activity
    R 0 GPL-3.0 1 0 0 Updated Apr 5, 2022
  • quetzal-EGGS Public

    Simulators of spatial genetic diversity: for non-programmers and researchers!

    Quetzal-framework/quetzal-EGGS’s past year of commit activity
    C++ 6 GPL-3.0 0 0 0 Updated Mar 20, 2022

People

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