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added cytopanel and showresults panel
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72 changes: 72 additions & 0 deletions
72
src/main/java/be/kuleuven/mgG/internal/tasks/ShowResultsPanelTask.java
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| package be.kuleuven.mgG.internal.tasks; | ||
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| import java.awt.Component; | ||
| import java.util.Properties; | ||
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| import org.cytoscape.application.swing.CySwingApplication; | ||
| import org.cytoscape.application.swing.CytoPanel; | ||
| import org.cytoscape.application.swing.CytoPanelComponent; | ||
| import org.cytoscape.application.swing.CytoPanelComponent2; | ||
| import org.cytoscape.application.swing.CytoPanelName; | ||
| import org.cytoscape.application.swing.CytoPanelState; | ||
| import org.cytoscape.model.events.RowsSetListener; | ||
| import org.cytoscape.work.AbstractTask; | ||
| import org.cytoscape.work.ProvidesTitle; | ||
| import org.cytoscape.work.TaskMonitor; | ||
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| import be.kuleuven.mgG.internal.model.MGGManager; | ||
| import be.kuleuven.mgG.internal.view.MGGCytoPanel; | ||
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| public class ShowResultsPanelTask extends AbstractTask { | ||
| final MGGManager manager; | ||
| final ShowResultsPanelTaskFactory factory; | ||
| final boolean show; | ||
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| public ShowResultsPanelTask(final MGGManager manager, | ||
| final ShowResultsPanelTaskFactory factory, boolean show) { | ||
| this.manager = manager; | ||
| this.factory = factory; | ||
| this.show = show; | ||
| } | ||
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| public void run(TaskMonitor monitor) { | ||
| monitor.setTitle("Show/hide results panel"); | ||
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| CySwingApplication swingApplication = manager.getService(CySwingApplication.class); | ||
| CytoPanel cytoPanel = swingApplication.getCytoPanel(CytoPanelName.EAST); | ||
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| // If the panel is not already registered, create it | ||
| if (cytoPanel.indexOfComponent("be.kuleuven.mgG.internal.MGG") < 0) { | ||
| CytoPanelComponent2 panel = new MGGCytoPanel(manager); | ||
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| // Register it | ||
| manager.registerService(panel, CytoPanelComponent.class, new Properties()); | ||
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| if (cytoPanel.getState() == CytoPanelState.HIDE) | ||
| cytoPanel.setState(CytoPanelState.DOCK); | ||
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| } else { | ||
| int compIndex = cytoPanel.indexOfComponent("be.kuleuven.mgG.internal.MGG"); | ||
| Component panel = cytoPanel.getComponentAt(compIndex); | ||
| if (panel instanceof CytoPanelComponent2) { | ||
| // Unregister it | ||
| manager.unregisterService(panel, CytoPanelComponent.class); | ||
| manager.setCytoPanel(null); | ||
| } | ||
| } | ||
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| // factory.reregister(); | ||
| } | ||
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| public static boolean isPanelRegistered(MGGManager manager) { | ||
| CySwingApplication swingApplication = manager.getService(CySwingApplication.class); | ||
| CytoPanel cytoPanel = swingApplication.getCytoPanel(CytoPanelName.EAST); | ||
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| if (cytoPanel.indexOfComponent("be.kuleuven.mgG.internal.MGG") >= 0) | ||
| return true; | ||
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| return false; | ||
| } | ||
| } |
58 changes: 58 additions & 0 deletions
58
src/main/java/be/kuleuven/mgG/internal/tasks/ShowResultsPanelTaskFactory.java
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| @@ -0,0 +1,58 @@ | ||
| package be.kuleuven.mgG.internal.tasks; | ||
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| import java.util.Properties; | ||
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| import static org.cytoscape.work.ServiceProperties.COMMAND; | ||
| import static org.cytoscape.work.ServiceProperties.COMMAND_DESCRIPTION; | ||
| import static org.cytoscape.work.ServiceProperties.COMMAND_NAMESPACE; | ||
| import static org.cytoscape.work.ServiceProperties.ENABLE_FOR; | ||
| import static org.cytoscape.work.ServiceProperties.INSERT_SEPARATOR_BEFORE; | ||
| import static org.cytoscape.work.ServiceProperties.IN_MENU_BAR; | ||
| import static org.cytoscape.work.ServiceProperties.MENU_GRAVITY; | ||
| import static org.cytoscape.work.ServiceProperties.PREFERRED_MENU; | ||
| import static org.cytoscape.work.ServiceProperties.TITLE; | ||
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| import org.cytoscape.model.CyNetwork; | ||
| import org.cytoscape.view.model.CyNetworkView; | ||
| import org.cytoscape.work.AbstractTaskFactory; | ||
| import org.cytoscape.work.TaskFactory; | ||
| import org.cytoscape.work.TaskIterator; | ||
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| import be.kuleuven.mgG.internal.model.MGGManager; | ||
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| public class ShowResultsPanelTaskFactory extends AbstractTaskFactory { | ||
| final MGGManager manager; | ||
| boolean show = false; | ||
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| public ShowResultsPanelTaskFactory(final MGGManager manager) { | ||
| this.manager = manager; | ||
| } | ||
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| public TaskIterator createTaskIterator() { | ||
| return new TaskIterator(new ShowResultsPanelTask(manager, this, show)); | ||
| } | ||
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| public boolean isReady() { | ||
| // We always want to be able to shut it off | ||
| if (!show) return true; | ||
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| CyNetwork net = manager.getCurrentNetwork(); | ||
| if (net == null) return false; | ||
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| //* Check for the existence of the 'flashweave-score' column in the edge table | ||
| boolean hasFlashweaveScore = net.getRow(net).get("flashweave-score",Double.class) != null; | ||
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| // Implement other checks if necessary | ||
| // boolean hasIdColumn = net.getDefaultNodeTable().getColumn("@id") != null; | ||
| // boolean hasScoreColumn = net.getDefaultEdgeTable().getColumn("score") != null; | ||
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| //* Return true if the column exists, otherwise return false | ||
| return hasFlashweaveScore; | ||
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| } | ||
| } | ||
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133 changes: 133 additions & 0 deletions
133
src/main/java/be/kuleuven/mgG/internal/view/AbstractMggPanel.java
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,133 @@ | ||
| package be.kuleuven.mgG.internal.view; | ||
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| import java.awt.Component; | ||
| import java.awt.Dimension; | ||
| import java.awt.Font; | ||
| import java.awt.event.ActionEvent; | ||
| import java.awt.event.ActionListener; | ||
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| import java.util.Collection; | ||
| import java.util.HashMap; | ||
| import java.util.Map; | ||
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| import javax.swing.Box; | ||
| import javax.swing.BoxLayout; | ||
| import javax.swing.JComponent; | ||
| import javax.swing.JLabel; | ||
| import javax.swing.JPanel; | ||
| import javax.swing.JSlider; | ||
| import javax.swing.JTextField; | ||
| import javax.swing.event.ChangeEvent; | ||
| import javax.swing.event.ChangeListener; | ||
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| import org.cytoscape.model.CyNetwork; | ||
| import org.cytoscape.util.swing.IconManager; | ||
| import org.cytoscape.util.swing.OpenBrowser; | ||
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| import be.kuleuven.mgG.internal.model.MGGManager; | ||
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| public abstract class AbstractMggPanel extends JPanel { | ||
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| protected final MGGManager manager; | ||
| protected final OpenBrowser openBrowser; | ||
| protected final Font iconFont; | ||
| protected final Font labelFont; | ||
| protected final Font textFont; | ||
| protected CyNetwork currentNetwork; | ||
| protected Map<CyNetwork, Map<String,Map<String, Double>>> filters; | ||
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| public AbstractMggPanel(final MGGManager manager) { | ||
| this.manager = manager; | ||
| this.openBrowser = manager.getService(OpenBrowser.class); | ||
| this.currentNetwork = manager.getCurrentNetwork(); | ||
| IconManager iconManager = manager.getService(IconManager.class); | ||
| iconFont = iconManager.getIconFont(17.0f); | ||
| labelFont = new Font("SansSerif", Font.BOLD, 10); | ||
| textFont = new Font("SansSerif", Font.PLAIN, 10); | ||
| filters = new HashMap<>(); | ||
| filters.put(currentNetwork, new HashMap<>()); | ||
| } | ||
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| abstract void doFilter(String type); | ||
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| abstract void undoFilters(); | ||
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| abstract double initFilter(String type, String text); | ||
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| protected JComponent createFilterSlider(String type, String text, CyNetwork network, boolean labels, double max) { | ||
| double value = 0.0; | ||
| if (filters.containsKey(network) && | ||
| filters.get(network).containsKey(type) && | ||
| filters.get(network).get(type).containsKey(text)) { | ||
| value = filters.get(network).get(type).get(text); | ||
| // System.out.println("value = "+value); | ||
| } else { | ||
| value = initFilter(type, text); | ||
| } | ||
| Box box = Box.createHorizontalBox(); | ||
| if (labels) { | ||
| JLabel label = new JLabel(text); | ||
| label.setFont(labelFont); | ||
| label.setPreferredSize(new Dimension(100,20)); | ||
| box.add(Box.createRigidArea(new Dimension(10,0))); | ||
| box.add(label); | ||
| box.add(Box.createHorizontalGlue()); | ||
| } | ||
| JSlider slider; | ||
| slider = new JSlider(0,(int)max,(int)(value*100)); | ||
| slider.setToolTipText("Filter ranges between 0.0 and " + max/100); | ||
| slider.setPreferredSize(new Dimension(150,20)); | ||
| box.add(slider); | ||
| // box.add(Box.createHorizontalGlue()); | ||
| JTextField textField; | ||
| textField = new JTextField(String.format("%.2f",value),4); | ||
| textField.setPreferredSize(new Dimension(30,20)); | ||
| textField.setMaximumSize(new Dimension(30,20)); | ||
| textField.setFont(textFont); | ||
| box.add(textField); | ||
| // Hook it up | ||
| addChangeListeners(type, text, slider, textField, max); | ||
| box.setAlignmentX(Component.LEFT_ALIGNMENT); | ||
| return box; | ||
| } | ||
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| protected void addChangeListeners(String type, String label, JSlider slider, | ||
| JTextField textField, double max) { | ||
| slider.addChangeListener(new ChangeListener() { | ||
| public void stateChanged(ChangeEvent e) { | ||
| JSlider sl = (JSlider)e.getSource(); | ||
| int value = sl.getValue(); | ||
| double v = ((double)value)/100.0; | ||
| textField.setText(String.format("%.2f",v)); | ||
| addFilter(type, label, v); | ||
| doFilter(type); | ||
| } | ||
| }); | ||
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| textField.addActionListener(new ActionListener() { | ||
| public void actionPerformed(ActionEvent e) { | ||
| JTextField field = (JTextField)e.getSource(); | ||
| String text = field.getText(); | ||
| slider.setValue((int)(Double.parseDouble(text)*100.0)); | ||
| } | ||
| }); | ||
| } | ||
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| protected void addFilter(String type, String label, double value) { | ||
| Map<String,Double> filter = filters.get(currentNetwork).get(type); | ||
| filter.put(label, value); | ||
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| if (value == 0) | ||
| filter.remove(label); | ||
| } | ||
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| protected void removeFilters(CyNetwork network) { | ||
| if (network != null && filters.containsKey(network)) | ||
| filters.remove(network); | ||
| } | ||
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| } |
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