Bug fix release

Fixes a bug causing an error when sending STRING networks from the web interface to Cytoscape for some species.

v2.1.0

New features:

• New Edge panel that shows the subscores (scores for different evidence channels) and includes a link to the STRING edge page, where the evidence can be further explored
• Ability to create networks for custom species that were uploaded by the user to STRING using the "Add organism" feature
• New backend for resolving compound and viral protein identifiers

Bug fixes and minor improvements:

• Linkout to UniProtKB is fixed.
• Compounds and viral proteins now have a description
• There is a linkout to the origin of the structure image (e.g. PDB or AlphaFold)

stringApp v2.0.2 release

This release comes with a few modifications in connection with STRING v12 being released. They include a new flat node design and update of the results panel for switching between different node styles as well as dynamic fetching of 3D protein structures and an updated internal species files.

stringApp v2.0.1 release

This is a bug fix release to improve the string filter enrichment command and the connectivity with the Omics Visualizer app. A new command string list selected species was also added.

stringApp v2.0.0 release

Main new features in this release:

• new STRING:cross-species query type for host-parasite and virus-host interactions
• new species GUI input supporting all species in STRING 10.5
• group-wise enrichment functionality
• add enriched term to network
• improved STRINGify functionality

stringApp v1.7.1 release

This is a bug fix release with focus on improving the enrichment panels, support for the new network type (physical interactions) and extended species list from STRING v11.5.

stringApp v1.7.0 release

This version of the app comes with several new features:

• Enabled network queries for physical interactions from STRING v11.5
• Added an option to change the network type between full STRING network and physical subnetwork
• New enrichment categories available due to the STRING update: WikiPathways, DISEASES, TISSUES, COMPARTMENTS
• Enrichment panel: selection of a node in the network view automatically selects the enriched terms annotating this node
• Edge Results panel: added a slider and buttons to hide/delete or show/fetch edges based on confidence and to change the network type
• Replaced the show/hide menus with checkbox menus
• Added documentation for commands & fixed some bugs in the commands
• Fixed node/edge filter initiation to be based on the attribute values