define how fluorescence data is stored

RI-imaging · Feb 12, 2019 · 0af9fc6 · 0af9fc6
1 parent 29c67d3
commit 0af9fc6
Showing 1 changed file with 5 additions and 2 deletions.
diff --git a/cellsino/sinogram.py b/cellsino/sinogram.py
@@ -52,8 +52,11 @@ def compute(self, angles, path=None, propagator="rytov"):
                     qps = qpimage.QPSeries(h5file=h5.require_group("qpseries"))
                     qps.add_qpimage(qpi)
 
-                    h5fl = h5.require_group("fluorescence")
-                    h5fl.create_dataset("{}".format(ii), data=fluor)
+                    h5fl = h5.require_group("flseries")
+                    h5fl.create_dataset("fl_{}".format(ii),
+                                        data=fluor,
+                                        fletcher32=True,
+                                        compression="gzip")
             else:
                 sino_fields[ii] = qpi.field
                 sino_fluor[ii] = fluor