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SNPtoAA.r

This script used as SNP file (HapMap format) to: 1/ Creat the coreesponding amino acid polyorphism file (all inndividuals) 2/ Creat for each gene an exon sequence (first transcript) in a format that can be used for polydNdS 3/ Creat a summary file that helps processing the dNdS results

LinkAAtoMAPP.r

link amino acid polymorphisms to MAPP qualitative predictions (good or bad) and to MAPP scores

LinkAAtoMAPP.r

link amino acid polymorphisms to SIFT p-values

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relate amino acid polymorphism to SNP positions and to results from SIFT/MAPP

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