fix: change the seq_id in the output gff to match the input samplename

RIVM-bioinformatics · Nov 23, 2022 · 37b7d9e · 37b7d9e
1 parent 454f27c
commit 37b7d9e
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diff --git a/.gitignore b/.gitignore
@@ -131,6 +131,7 @@ dmypy.json
 
 # IDE
 .vscode/
+test*
 notes.txt
 
 #additional

diff --git a/TrueConsense/TrueConsense.py b/TrueConsense/TrueConsense.py
@@ -234,6 +234,7 @@ def main():
     indexDict = IndexDF.to_dict("index")
     GffHeader = IndexGff.header
     GffDF = IndexGff.df
+    GffDF["seq_id"] = args.samplename
     GffDict = GffDF.to_dict("index")
 
     with cf.ThreadPoolExecutor(max_workers=args.threads) as xc: