nucleopy

Scientific Python library to easily work with nucleotide data. Users can create DNA and RNA objects and easily manipulate them for use in scientific programming.

Author

Rohan Koodli

To Use

pip install nucleopy

See the examples folder for example use cases for nucleopy.

Creating a nucleotide object

r = RNA('AGGCUUUACA')
d = DNA('ATCGGATCCG')

Functions

d.complement() # TAGCCTAGGC
d.isComplement('TAAGCG') # False
r.toDNA() # AGGCTTTACA

RNA-specific functions (requires ViennaRNA installation)

r.Viennafold()
r.ViennaTargetEnergy('(((....)))')