Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space
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README.md

Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space

The Arioc software is documented in the user guide. Download the user guide directly (Arioc.guide.pdf) or as part of the current release (click here).

Related publications

Wilton R, Budavari T, Langmead B, Wheelan SJ, Salzberg SL, Szalay AS. Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space. PeerJ. 2015, 3:e808. DOI:10.7717/peerj.808

Wilton R, Li X, Feinberg AP, Szalay AS. Arioc: GPU-accelerated alignment of short bisulfite-treated reads. Bioinformatics. 2018, 34:1-3. DOI:10.1093/bioinformatics/bty167