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Reset species output paths when deleting all species jobs (#686)
When we `delete_all_species_jobs`, for example after switching a TS guess to something better and we no longer need the sp, freq, etc jobs of the previous TS, we must also reset the `output` dict of the `Scheduler` object, so that all paths are empty. Note that for `irc` we have two paths, forward and reverse, so we treat it differently (see [here ](https://github.com/ReactionMechanismGenerator/ARC/blob/main/arc/scheduler.py#L101)the structure of the output dict)
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