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#!/usr/bin/env python | ||
# encoding: utf-8 | ||
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name = "Surface Adsorption Corrections Lithium" | ||
shortDesc = "Li" | ||
longDesc = """ | ||
Changes due to adsorbing on a Lithium electrode. | ||
Note: "-h" means "horizontal" | ||
Li enthalpy of formation 159.30 kJ/mol https://webbook.nist.gov/cgi/cbook.cgi?ID=C7439932&Units=SI&Mask=1#ref-2 | ||
https://labs.chem.ucsb.edu/zakarian/armen/11---bonddissociationenergy.pdf | ||
LiF = 577 | ||
LiH = 247 | ||
LiO = 341 | ||
LiOH = 427 | ||
https://pubs.acs.org/doi/abs/10.1021/om950966x | ||
Li-CH3 = 190.37 | ||
LiF | ||
4.329154975994253 | ||
LiH | ||
0.9089463523933348 | ||
LiO | ||
1.8831875966917782 | ||
LiOH | ||
2.7745146925392903 | ||
LiC | ||
0.3220178240463045 | ||
""" | ||
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||
entry( | ||
index = 0, | ||
label = "R*", | ||
group = | ||
""" | ||
1 R ux | ||
2 * X ux | ||
""", | ||
thermo = None, | ||
shortDesc = """Anything adsorbed anyhow.""", | ||
longDesc = | ||
""" | ||
R | ||
X | ||
*********** | ||
This node should be empty, ensuring that one of the nodes below is used. | ||
The group could well be defined as: | ||
1 R ux | ||
2 * Xux | ||
but then it is identical with the R*vdW node, and the database tests | ||
do not like that. It should be OK, because things would check the | ||
tree in order, and if there *was* a bond it would match either | ||
R*bidentate or R*single_chemisorbed and thus not R*vdW. | ||
""", | ||
) | ||
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entry( | ||
index = 1, | ||
label = "R*single_chemisorbed", | ||
group = | ||
""" | ||
1 * X u0 {2,S} | ||
2 R ux {1,S} | ||
""", | ||
thermo = ThermoData( | ||
Tdata = ([300,400,500,600,800,1000,1500],'K'), | ||
Cpdata = ([-0.07,1.05,1.77,2.43,2.8,3.08,3.39],'cal/(mol*K)'), | ||
H298 = (-2,'eV/molecule'), | ||
S298 = (-38.17,'cal/(mol*K)'), | ||
), | ||
shortDesc = """""", | ||
longDesc = | ||
""" | ||
""", | ||
) | ||
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entry( | ||
index = 2, | ||
label = "C*", | ||
group = | ||
""" | ||
1 * X u0 {2,S} | ||
2 C ux {1,S} | ||
""", | ||
thermo = ThermoData( | ||
Tdata = ([300,400,500,600,800,1000,1500],'K'), | ||
Cpdata = ([-0.45,0.61,1.42,2.02,2.81,3.26,3.73],'cal/(mol*K)'), | ||
H298 = (-0.5,'eV/molecule'), | ||
S298 = (-32.73,'cal/(mol*K)'), | ||
), | ||
shortDesc = """""", | ||
longDesc = | ||
""" | ||
CR3 | ||
| | ||
*********** | ||
""", | ||
) | ||
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||
entry( | ||
index = 3, | ||
label = "O*", | ||
group = | ||
""" | ||
1 * X u0 {2,S} | ||
2 O ux {1,S} | ||
""", | ||
thermo = ThermoData( | ||
Tdata = ([300,400,500,600,800,1000,1500],'K'), | ||
Cpdata = ([1.09,1.82,2.2,2.42,2.65,2.75,2.86],'cal/(mol*K)'), | ||
H298 = (-1.88,'eV/molecule'), | ||
S298 = (-33.89,'cal/(mol*K)'), | ||
), | ||
shortDesc = """Came from OH single-bonded on Pt(111)""", | ||
longDesc = | ||
""" | ||
R | ||
| | ||
O | ||
| | ||
*********** | ||
""", | ||
) | ||
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||
entry( | ||
index = 4, | ||
label = "F*", | ||
group = | ||
""" | ||
1 * X u0 {2,S} | ||
2 F ux {1,S} | ||
""", | ||
thermo = ThermoData( | ||
Tdata = ([300,400,500,600,800,1000,1500],'K'), | ||
Cpdata = ([1.09,1.82,2.2,2.42,2.65,2.75,2.86],'cal/(mol*K)'), | ||
H298 = (-4.33,'eV/molecule'), | ||
S298 = (-26,'cal/(mol*K)'), | ||
), | ||
shortDesc = """""", | ||
longDesc = | ||
""" | ||
F | ||
| | ||
*********** | ||
""", | ||
|
||
) | ||
|
||
entry( | ||
index = 5, | ||
label = "H*", | ||
group = | ||
""" | ||
1 * X u0 {2,S} | ||
2 H ux {1,S} | ||
""", | ||
thermo = ThermoData( | ||
Tdata = ([300,400,500,600,800,1000,1500],'K'), | ||
Cpdata = ([1.09,1.82,2.2,2.42,2.65,2.75,2.86],'cal/(mol*K)'), | ||
H298 = (-0.9,'eV/molecule'), | ||
S298 = (-26,'cal/(mol*K)'), | ||
), | ||
shortDesc = """""", | ||
longDesc = | ||
""" | ||
H | ||
| | ||
*********** | ||
""", | ||
) | ||
|
||
entry( | ||
index = 6, | ||
label = "OH*", | ||
group = | ||
""" | ||
1 * X u0 {2,S} | ||
2 O u0 {1,S} {3,S} | ||
3 H u0 {2,S} | ||
""", | ||
thermo = ThermoData( | ||
Tdata = ([300,400,500,600,800,1000,1500],'K'), | ||
Cpdata = ([1.09,1.82,2.2,2.42,2.65,2.75,2.86],'cal/(mol*K)'), | ||
H298 = (-2.77,'eV/molecule'), | ||
S298 = (-34,'cal/(mol*K)'), | ||
), | ||
shortDesc = """Came from OH single-bonded on Pt(111)""", | ||
longDesc = | ||
""" | ||
H | ||
| | ||
O | ||
| | ||
*********** | ||
""", | ||
) | ||
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entry( | ||
index = 7, | ||
label = "R*vdW", | ||
group = | ||
""" | ||
1 * X u0 | ||
2 R u0 | ||
""", | ||
thermo = ThermoData( | ||
Tdata = ([300,400,500,600,800,1000,1500],'K'), | ||
Cpdata = ([1.23,1.71,2,2.19,2.39,2.5,2.61],'cal/(mol*K)'), | ||
H298 = (-0.5,'eV/molecule'), | ||
S298 = (-20.48,'cal/(mol*K)'), | ||
), | ||
shortDesc = """Average of (CR4)*, (NR3)* and (OR2)* thermo.""", | ||
longDesc = | ||
""" | ||
""", | ||
metal = "Pt", | ||
facet = "111", | ||
) | ||
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||
entry( | ||
index = 8, | ||
label = "O*vdW", | ||
group = | ||
""" | ||
1 * X u0 p0 | ||
2 O u0 p2 | ||
""", | ||
thermo = ThermoData( | ||
Tdata = ([300,400,500,600,800,1000,1500],'K'), | ||
Cpdata = ([0.71,1.22,1.49,1.65,1.81,1.9,1.98],'cal/(mol*K)'), | ||
H298 = (-0.8,'eV/molecule'), | ||
S298 = (-22.53,'cal/(mol*K)'), | ||
), | ||
shortDesc = """""", | ||
longDesc = | ||
""" | ||
""", | ||
) | ||
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tree( | ||
""" | ||
L1: R* | ||
L2: R*single_chemisorbed | ||
L3: C* | ||
L3: O* | ||
L4: OH* | ||
L3: F* | ||
L3: H* | ||
L2: R*vdW | ||
L3: O*vdW | ||
""" | ||
) | ||
|