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Earlier I combined the Roslin genome + mitochondrial sequence from NCBI (file here). I want to look at my data in IGV, but need a .fai for the genome! How do I create an index file? @sr320 Do you already have a .fai file for the combined genome somewhere? |
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Replies: 4 comments 1 reply
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Assuming I could use |
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Working on putting this in cloud as we speak... but I would you index feature in IGV |
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so create the index myself in IGV? |
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Yes, that is what I suggest
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Used instructions from IGV to index FASTA and create a genome for IGV: https://software.broadinstitute.org/software/igv/LoadGenome combined Roslin/mito genome, index file, and IGV genome found here: https://gannet.fish.washington.edu/spartina/project-oyster-oa/data/Cg-roslin/ |
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Used instructions from IGV to index FASTA and create a genome for IGV: https://software.broadinstitute.org/software/igv/LoadGenome
combined Roslin/mito genome, index file, and IGV genome found here: https://gannet.fish.washington.edu/spartina/project-oyster-oa/data/Cg-roslin/