FeatureMap - TransitionGroup Linking #24
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
jcharkow
approved these changes
Nov 9, 2023
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
I added Mobilogram and Spectrum classes, similar to the Chromatogram class.
I also added a FeatureMap class that is used to store the a feature dataframe (mz, rt, im, intensity, mslevel etc) that is obtained from a targeted extraction experiment. The class has methods to extract chromatograms, mobilgorams, and spectra and stores them in their associated classes.
I modified the TransitionGroup class to load data from a FeatureMap, which then loads the associated precursor and transition chromatograms, mobilograms and spectra into the TransitionGroup. I also added a protein property to attached the Protein class which contains information about the Protein and downstream class levels.