Pinned repositories
Repositories
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nala
Text mining of natural language mutations mentions
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nalaf
NLP framework in python for entity recognition and relationship extraction
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bio_embeddings
Repository containing bio_embeddings resources
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ProNAhot
Forked from JiajunQiu/ProNAhotProNAhot: Predicting protein-DNA, protein-RNA and protein-protein binding hot-spots from sequence
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predictprotein-docker
Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository will result in a fully functioning predictprotein suite, including all of its required methods. Databases are not included.
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SeqVec
Forked from mheinzinger/SeqVecModelling the Language of Life - Deep Learning Protein Sequences
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ProNA2020
ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence
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bindPredict
Prediction of binding site residues in DNA-binding proteins and enzymes
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LocNuclei
Prediction of subnuclear locations
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LocText
Relation Extraction (RE) of: Proteins <--> Cell Compartments
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FunFamsConsensus
Provides functionality to compute the binding residue similarity of sequences in the FunFam dataset.
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JS16_ProjectF Archived
In this project we will build a web portal for our GoT data analysis and visualization system. The website will integrate all the apps created in projects B-D with the help of the integration team assigned to Project E.
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JS18_ProjectA_Group1 Archived
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JS18_ProjectA_Group2 Archived
In this project we created the framework that translates natural language to data visualization creation. This project encompasses loading and querying data and creating simple graphs.
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JS18_ProjectB_Group4 Archived
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JS18_ProjectB_Group3 Archived
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some-scripts
General-utility scripts that hopefully are useful for somebody
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relna
Biomedical Relation Extraction for Transcription Factor and Gene / Gene Products (part of a Master Thesis at Rostlab, TUM)
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ConSurf
Evolutionary conservation estimation of residues or nucleotides
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JS16_ProjectC_Group10 Archived
The known GoT world is vast and stretches over the three continents of Westeros, Essos and Sothorys. Readers of the Ice and Fire books will get acquainted and transported from King's Landing to the borders of the Seven Kingdoms, and further on across the Narrow Sea. Over two thousand characters mentioned in the books have been associated with mu…
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LocTree3
Protein Subcelullar Localization Sequenced-Based Predictor
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DM_CS_WS_2016-17
Repo for general info of the course and communication
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pssh-parser
A simple JS pssh parser
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JS16_ProjectA Archived
In this project we will lay the foundations for our system by integrating data from multiple sources into a central database. The database will serve the apps and the visualization tool that will be developed in other projects.
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JS16_ProjectD_Group4 Archived
Joffrey Baratheon is one of the most loathed characters in TV history. As a matter of fact people were celebrating his TV death on Twitter. We are interested to learn more on how people feel about different characters by analyzing tweets mentioning GoT characters. In this project you will be analyzing Twitter feeds across a timeline, you will lo…
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JS16_ProjectB_Group6 Archived
Game of Thrones characters are always in danger of being eliminated. The challenge in this assignment is to see at what risk are the characters that are still alive of being eliminated. The goal of this project is to rank characters by their Percentage Likelihood of Death (PLOD). You will assign a PLOD using machine learning approaches.
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JS16_ProjectD_Group5 Archived
Joffrey Baratheon is one of the most loathed characters in TV history. As a matter of fact people were celebrating his TV death on Twitter. We are interested to learn more on how people feel about different characters by analyzing tweets mentioning GoT characters. In this project you will be analyzing Twitter feeds across a timeline, you will lo…
